miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 127734 0.69 0.876818
Target:  5'- cGACGAcccaGCGCGGUCGCGgcCGuaGACGg- -3'
miRNA:   3'- uUUGCU----UGCGCCAGCGCa-GC--CUGCag -5'
9101 3' -55.5 NC_002512.2 + 11425 0.69 0.876818
Target:  5'- gAGAUGAcCGCGGUcCGCGgggacgccgCGGACGg- -3'
miRNA:   3'- -UUUGCUuGCGCCA-GCGCa--------GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 114937 0.69 0.883682
Target:  5'- -cGCGGACGCGGUCaacacgGUGcugCGGGCGg- -3'
miRNA:   3'- uuUGCUUGCGCCAG------CGCa--GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 223821 0.69 0.883682
Target:  5'- gGGACG-ACGaCGG-CGCGUCGGAgGg- -3'
miRNA:   3'- -UUUGCuUGC-GCCaGCGCAGCCUgCag -5'
9101 3' -55.5 NC_002512.2 + 93598 0.69 0.883682
Target:  5'- --gUGAGCGUGGUCGgggaagaacggcCGUUGGACGg- -3'
miRNA:   3'- uuuGCUUGCGCCAGC------------GCAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 89608 0.69 0.883682
Target:  5'- gGAACGucCGCGGggCGC-UCGGGCGcCg -3'
miRNA:   3'- -UUUGCuuGCGCCa-GCGcAGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 228567 0.69 0.890336
Target:  5'- cGGACGcuuccuuacCGCGGUCGUGUCGG-CGg- -3'
miRNA:   3'- -UUUGCuu-------GCGCCAGCGCAGCCuGCag -5'
9101 3' -55.5 NC_002512.2 + 138334 0.69 0.890336
Target:  5'- aGAGCG-GCGUGGUCaGCGccaGGugGUCc -3'
miRNA:   3'- -UUUGCuUGCGCCAG-CGCag-CCugCAG- -5'
9101 3' -55.5 NC_002512.2 + 201683 0.69 0.892938
Target:  5'- cGGCGAGgGCGGcCGCGUcuggugcgggaucggCGGcgGCGUCg -3'
miRNA:   3'- uUUGCUUgCGCCaGCGCA---------------GCC--UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 80859 0.69 0.896776
Target:  5'- ---gGGACGCGGggcUCgGUGUCGGGCGg- -3'
miRNA:   3'- uuugCUUGCGCC---AG-CGCAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 200841 0.69 0.896776
Target:  5'- cAGCGGggGCGCGG-CGCGUCucugccgcauGGCGUCg -3'
miRNA:   3'- uUUGCU--UGCGCCaGCGCAGc---------CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 32577 0.69 0.902999
Target:  5'- -cGCGggUGCcggGGUCGUGUCGGAa--- -3'
miRNA:   3'- uuUGCuuGCG---CCAGCGCAGCCUgcag -5'
9101 3' -55.5 NC_002512.2 + 183449 0.69 0.902999
Target:  5'- --uCGAugGCGGUCGagaaCGUCGG-CGcCg -3'
miRNA:   3'- uuuGCUugCGCCAGC----GCAGCCuGCaG- -5'
9101 3' -55.5 NC_002512.2 + 21052 0.69 0.902999
Target:  5'- gGAACG-GCGCGG-CGCGUgaGGGCG-Ca -3'
miRNA:   3'- -UUUGCuUGCGCCaGCGCAg-CCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 82002 0.68 0.909001
Target:  5'- --uCGGGgGCGGUCGCGgCGaGcCGUCg -3'
miRNA:   3'- uuuGCUUgCGCCAGCGCaGC-CuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 48335 0.68 0.909001
Target:  5'- -cACGAACGaGGacaUCGCG-CGGGCGUg -3'
miRNA:   3'- uuUGCUUGCgCC---AGCGCaGCCUGCAg -5'
9101 3' -55.5 NC_002512.2 + 216809 0.68 0.909001
Target:  5'- uGACGAugGC-GUCGCGggUCGGguacggcuGCGUCu -3'
miRNA:   3'- uUUGCUugCGcCAGCGC--AGCC--------UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 84236 0.68 0.91134
Target:  5'- aGAGCGAGCGCGGgcccggcaucucgaCGCGgaaggCGGGCa-- -3'
miRNA:   3'- -UUUGCUUGCGCCa-------------GCGCa----GCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 174201 0.68 0.914213
Target:  5'- uGGGCGAACaGCGG-CGCGUucagcgccccgccCGG-CGUCg -3'
miRNA:   3'- -UUUGCUUG-CGCCaGCGCA-------------GCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 74887 0.68 0.914213
Target:  5'- cGACGGGCGaCGGauccucgUCGCGaCGGACG-Cg -3'
miRNA:   3'- uUUGCUUGC-GCC-------AGCGCaGCCUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.