miRNA display CGI


Results 21 - 40 of 240 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 137055 0.73 0.514467
Target:  5'- gGACGGCCAgggaggaGGCGCCGCGCCc--- -3'
miRNA:   3'- -CUGCCGGUagg----UCGUGGUGCGGuagu -5'
9107 3' -58.1 NC_002512.2 + 106734 0.73 0.533514
Target:  5'- cGGCGGCgAUCgCGGCGCCGcCGCCccGUCc -3'
miRNA:   3'- -CUGCCGgUAG-GUCGUGGU-GCGG--UAGu -5'
9107 3' -58.1 NC_002512.2 + 80639 0.73 0.533514
Target:  5'- -cCGGCCGUCCgcggcggcGGCGCCGgGuCCGUCGg -3'
miRNA:   3'- cuGCCGGUAGG--------UCGUGGUgC-GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 90918 0.73 0.533514
Target:  5'- uGGCGGCCGcgaacggggCCGGCgcgGCCGcCGCCGUCGu -3'
miRNA:   3'- -CUGCCGGUa--------GGUCG---UGGU-GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 165528 0.73 0.533514
Target:  5'- aACGGgCAgaCCAGCACCGcCGUCAUCGa -3'
miRNA:   3'- cUGCCgGUa-GGUCGUGGU-GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 45334 0.73 0.533514
Target:  5'- gGAgGGCCGUCCgccGGC-CCGCGCCGcCGg -3'
miRNA:   3'- -CUgCCGGUAGG---UCGuGGUGCGGUaGU- -5'
9107 3' -58.1 NC_002512.2 + 9508 0.72 0.543132
Target:  5'- cGACGGCCGgccCCAGCACgGCGgCggCGg -3'
miRNA:   3'- -CUGCCGGUa--GGUCGUGgUGCgGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 151341 0.72 0.552806
Target:  5'- cGCGGCCcggCCGGCGCCAuguUGCC-UCAa -3'
miRNA:   3'- cUGCCGGua-GGUCGUGGU---GCGGuAGU- -5'
9107 3' -58.1 NC_002512.2 + 50654 0.72 0.552806
Target:  5'- cACGGCCcgCCAGCugCugGCgCA-CAa -3'
miRNA:   3'- cUGCCGGuaGGUCGugGugCG-GUaGU- -5'
9107 3' -58.1 NC_002512.2 + 27759 0.72 0.559608
Target:  5'- cGGCGGCCGagaCCGGCGCCaccagcugacgaggACGCgGUCGg -3'
miRNA:   3'- -CUGCCGGUa--GGUCGUGG--------------UGCGgUAGU- -5'
9107 3' -58.1 NC_002512.2 + 7141 0.72 0.562531
Target:  5'- cGAgGGagaCGUCCAGCAgCugGCCGUUg -3'
miRNA:   3'- -CUgCCg--GUAGGUCGUgGugCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 90861 0.72 0.562531
Target:  5'- gGACGaGCCGUCC-GCGCC--GCCGUCGg -3'
miRNA:   3'- -CUGC-CGGUAGGuCGUGGugCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 101608 0.72 0.562531
Target:  5'- gGGCGGCCGUcggcCCGGCGCCGggacgcgaguCGCCGcUCGa -3'
miRNA:   3'- -CUGCCGGUA----GGUCGUGGU----------GCGGU-AGU- -5'
9107 3' -58.1 NC_002512.2 + 186047 0.72 0.566434
Target:  5'- cACGGCCGUCguGUACCcguacaaccucaagaGCGCCAUg- -3'
miRNA:   3'- cUGCCGGUAGguCGUGG---------------UGCGGUAgu -5'
9107 3' -58.1 NC_002512.2 + 112821 0.72 0.582112
Target:  5'- uGACGGCCAcCCGGUugagggaCACGgCCGUCAu -3'
miRNA:   3'- -CUGCCGGUaGGUCGug-----GUGC-GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 94544 0.72 0.582112
Target:  5'- cGACGGCCAg-CAGCACCccggcgcggcugACGCCGaccUCGg -3'
miRNA:   3'- -CUGCCGGUagGUCGUGG------------UGCGGU---AGU- -5'
9107 3' -58.1 NC_002512.2 + 226191 0.72 0.591956
Target:  5'- aGACGGCCGcgCCguuAGCgcgcgGCCGgGCCAUCAc -3'
miRNA:   3'- -CUGCCGGUa-GG---UCG-----UGGUgCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 107351 0.72 0.591956
Target:  5'- cGGCGaGCCugauGUCCAGCGgCGCGCCGg-- -3'
miRNA:   3'- -CUGC-CGG----UAGGUCGUgGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 226662 0.71 0.601828
Target:  5'- cGACGcGCCggGUCCagacucucugAGCGCCGgGCCGUCGc -3'
miRNA:   3'- -CUGC-CGG--UAGG----------UCGUGGUgCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 110301 0.71 0.601828
Target:  5'- uGCGGCaCAUCCAGCGCauCACGCuCAg-- -3'
miRNA:   3'- cUGCCG-GUAGGUCGUG--GUGCG-GUagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.