miRNA display CGI


Results 21 - 40 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 6342 0.73 0.526028
Target:  5'- aCCGggCGCG-GGGCCGGCgggccgcgGGCGCGu -3'
miRNA:   3'- cGGCuaGUGCgCUUGGCCGa-------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 221432 0.73 0.535426
Target:  5'- gGCCGc-CAUGCGGACCgcGGCcggGGCGCGg -3'
miRNA:   3'- -CGGCuaGUGCGCUUGG--CCGa--CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 12655 0.72 0.553437
Target:  5'- uGCUGAUCAacuacuaccacauCGgcaCGGGCCGGCUGGCGa- -3'
miRNA:   3'- -CGGCUAGU-------------GC---GCUUGGCCGACCGCgu -5'
9107 5' -58.9 NC_002512.2 + 210613 0.72 0.55439
Target:  5'- uCCGAUCACcUGGuCCGGCUGG-GCAa -3'
miRNA:   3'- cGGCUAGUGcGCUuGGCCGACCgCGU- -5'
9107 5' -58.9 NC_002512.2 + 122684 0.72 0.563947
Target:  5'- cCCGG-C-CGCGGcCCGGCUGGUGCc -3'
miRNA:   3'- cGGCUaGuGCGCUuGGCCGACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 184545 0.72 0.573548
Target:  5'- aGCCGGcgGCGCGGGCCGGCggacGGCc-- -3'
miRNA:   3'- -CGGCUagUGCGCUUGGCCGa---CCGcgu -5'
9107 5' -58.9 NC_002512.2 + 4093 0.72 0.573548
Target:  5'- gGCCGcc--CGCGGcCCGGCcGGCGCAg -3'
miRNA:   3'- -CGGCuaguGCGCUuGGCCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 119357 0.72 0.583186
Target:  5'- cGCCGGUCACgGCGAcucGCUcGC-GGCGCGc -3'
miRNA:   3'- -CGGCUAGUG-CGCU---UGGcCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 98340 0.72 0.583186
Target:  5'- cCCGAgCGCGaCGAACUGGCcguUGGCGUc -3'
miRNA:   3'- cGGCUaGUGC-GCUUGGCCG---ACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 60879 0.71 0.592856
Target:  5'- cGCCcgGAUCGC-CGAGCCGGC--GCGCGa -3'
miRNA:   3'- -CGG--CUAGUGcGCUUGGCCGacCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 91876 0.71 0.592856
Target:  5'- cGCCG-UCcgGCGCGGGCggCGGCgcGGCGCAc -3'
miRNA:   3'- -CGGCuAG--UGCGCUUG--GCCGa-CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 152691 0.71 0.602551
Target:  5'- gGCCGGUCucguCGCGuccCCGGUcggGGUGCGg -3'
miRNA:   3'- -CGGCUAGu---GCGCuu-GGCCGa--CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 169431 0.71 0.602551
Target:  5'- uCCG-UCGCGCGGAUguUGGC-GGCGCAc -3'
miRNA:   3'- cGGCuAGUGCGCUUG--GCCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 112421 0.71 0.602551
Target:  5'- uGCUGAgcaGCGCGAucgacACCGGCgacagcuucUGGUGCAu -3'
miRNA:   3'- -CGGCUag-UGCGCU-----UGGCCG---------ACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 122017 0.71 0.602551
Target:  5'- gGCCGGagGCgGCGGAUCGGCgcucGCGCAc -3'
miRNA:   3'- -CGGCUagUG-CGCUUGGCCGac--CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 184574 0.71 0.612267
Target:  5'- uCCGAcC-CGCGGGCCGGCagGGCgGCGg -3'
miRNA:   3'- cGGCUaGuGCGCUUGGCCGa-CCG-CGU- -5'
9107 5' -58.9 NC_002512.2 + 144713 0.71 0.612267
Target:  5'- cCCG-UCGCGCcuGggUCaGCUGGCGCAc -3'
miRNA:   3'- cGGCuAGUGCG--CuuGGcCGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 111789 0.71 0.612267
Target:  5'- gGCCGGUcCGCGCGGucGCCG-CcGGCGCc -3'
miRNA:   3'- -CGGCUA-GUGCGCU--UGGCcGaCCGCGu -5'
9107 5' -58.9 NC_002512.2 + 24852 0.71 0.621996
Target:  5'- gGCCGGUCgGCgGCGGACgCGGCcccgaccgaGGCGCGu -3'
miRNA:   3'- -CGGCUAG-UG-CGCUUG-GCCGa--------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 134138 0.71 0.621996
Target:  5'- gGCCGucgcggCGCGCGucCCGGCcGGCGgGg -3'
miRNA:   3'- -CGGCua----GUGCGCuuGGCCGaCCGCgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.