miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 5' -51.4 NC_002512.2 + 113322 1.09 0.010909
Target:  5'- aGUAGACGUAGAAGAGGUUGCGCCAGAc -3'
miRNA:   3'- -CAUCUGCAUCUUCUCCAACGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 50424 0.76 0.739615
Target:  5'- -cAGACcaGGAAGAGGccgGCGCCGGAu -3'
miRNA:   3'- caUCUGcaUCUUCUCCaa-CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 191091 0.72 0.892735
Target:  5'- aGUGGGgGUGGAugguGGGUUGCuGCCGGGg -3'
miRNA:   3'- -CAUCUgCAUCUuc--UCCAACG-CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 85087 0.72 0.917195
Target:  5'- cGUAGGCGUugaggaaccacgaGGggGAGGUcgGgGUCAGGa -3'
miRNA:   3'- -CAUCUGCA-------------UCuuCUCCAa-CgCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 121849 0.71 0.92343
Target:  5'- -aGGACGgcGggGAGGacgGCGgCGGAu -3'
miRNA:   3'- caUCUGCauCuuCUCCaa-CGCgGUCU- -5'
9112 5' -51.4 NC_002512.2 + 145782 0.71 0.92343
Target:  5'- uGUGGcCGcgGGAGGAGGUggagGCccGCCAGAa -3'
miRNA:   3'- -CAUCuGCa-UCUUCUCCAa---CG--CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 4581 0.71 0.934009
Target:  5'- -gGGGCGgcGGAGGAGGcgGCGCCGcGGg -3'
miRNA:   3'- caUCUGCa-UCUUCUCCaaCGCGGU-CU- -5'
9112 5' -51.4 NC_002512.2 + 67946 0.71 0.934009
Target:  5'- -cGGACGgAGAGG-GGUcGCGCCGGu -3'
miRNA:   3'- caUCUGCaUCUUCuCCAaCGCGGUCu -5'
9112 5' -51.4 NC_002512.2 + 92028 0.71 0.934009
Target:  5'- -aAGGCGUGGGAGGGGaaGaCGCgGGAg -3'
miRNA:   3'- caUCUGCAUCUUCUCCaaC-GCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 221280 0.71 0.938932
Target:  5'- -gGGcGCGUGGAGGGGGggGagGCCGGGg -3'
miRNA:   3'- caUC-UGCAUCUUCUCCaaCg-CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 127288 0.71 0.948054
Target:  5'- -cGGACGgcgAGGAGAGGaggaaacgcgUGCGCgAGAc -3'
miRNA:   3'- caUCUGCa--UCUUCUCCa---------ACGCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 89743 0.7 0.959962
Target:  5'- -gAGGuCGUGGGAGAGGUUcccgcggucgGCGCgCGGGc -3'
miRNA:   3'- caUCU-GCAUCUUCUCCAA----------CGCG-GUCU- -5'
9112 5' -51.4 NC_002512.2 + 114041 0.7 0.959962
Target:  5'- gGUGGACGUAGAGGGcGG--GC-CCGGAa -3'
miRNA:   3'- -CAUCUGCAUCUUCU-CCaaCGcGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 131033 0.7 0.959962
Target:  5'- -aGGGCGUcggggccgcGGggGAGGacggcgccGCGCCGGAg -3'
miRNA:   3'- caUCUGCA---------UCuuCUCCaa------CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 227275 0.7 0.963813
Target:  5'- -aGGACGgcggagaacagcaccAGGAGGGGgaGCGCCAGc -3'
miRNA:   3'- caUCUGCa--------------UCUUCUCCaaCGCGGUCu -5'
9112 5' -51.4 NC_002512.2 + 221610 0.69 0.96984
Target:  5'- gGUGGACGgcGAGGAGGgaGCGgguCCAc- -3'
miRNA:   3'- -CAUCUGCauCUUCUCCaaCGC---GGUcu -5'
9112 5' -51.4 NC_002512.2 + 137054 0.69 0.96984
Target:  5'- -gGGACGgccagGGAGGAGGcgccGCGCCcgGGAa -3'
miRNA:   3'- caUCUGCa----UCUUCUCCaa--CGCGG--UCU- -5'
9112 5' -51.4 NC_002512.2 + 166208 0.69 0.972707
Target:  5'- uUGGGCGgcGAGGAGGgccgcgcGCGCguGGg -3'
miRNA:   3'- cAUCUGCauCUUCUCCaa-----CGCGguCU- -5'
9112 5' -51.4 NC_002512.2 + 57109 0.69 0.972707
Target:  5'- -gGGACGaGGAAGcGGGgggUGCGCCGa- -3'
miRNA:   3'- caUCUGCaUCUUC-UCCa--ACGCGGUcu -5'
9112 5' -51.4 NC_002512.2 + 102459 0.69 0.975371
Target:  5'- --uGGCGUcgcGGAGGAGGgcGCGCCc-- -3'
miRNA:   3'- cauCUGCA---UCUUCUCCaaCGCGGucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.