Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9112 | 5' | -51.4 | NC_002512.2 | + | 67974 | 0.68 | 0.988999 |
Target: 5'- cGUGG-CGUccgccGGAGGAGGgccgGCGCgAGGa -3' miRNA: 3'- -CAUCuGCA-----UCUUCUCCaa--CGCGgUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 89424 | 0.68 | 0.982224 |
Target: 5'- aGgcGGCGUGacGGAGAGGUggcgcgagcUGUGUCGGAa -3' miRNA: 3'- -CauCUGCAU--CUUCUCCA---------ACGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 20294 | 0.68 | 0.982224 |
Target: 5'- cGUGGACGUGGc---GGUgaccGUGCCGGAc -3' miRNA: 3'- -CAUCUGCAUCuucuCCAa---CGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 102438 | 0.68 | 0.982224 |
Target: 5'- uUAGAUGUGacGGAGAGGacGCGgCGGAg -3' miRNA: 3'- cAUCUGCAU--CUUCUCCaaCGCgGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 44127 | 0.68 | 0.985922 |
Target: 5'- -aAGGCGUAGAcGAGGUcGaCGgaCCAGAg -3' miRNA: 3'- caUCUGCAUCUuCUCCAaC-GC--GGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 28086 | 0.68 | 0.987534 |
Target: 5'- -gAGACGgcGGAGAGGUcGcCGCCc-- -3' miRNA: 3'- caUCUGCauCUUCUCCAaC-GCGGucu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 112511 | 0.68 | 0.987534 |
Target: 5'- aGUAGAUcgAGAAGGGcGUgcgGUGCCAGu -3' miRNA: 3'- -CAUCUGcaUCUUCUC-CAa--CGCGGUCu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 169345 | 0.68 | 0.987534 |
Target: 5'- -cGGACGUGGGAGGGGacuggcaugUGgGUgGGAg -3' miRNA: 3'- caUCUGCAUCUUCUCCa--------ACgCGgUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 14319 | 0.68 | 0.988999 |
Target: 5'- uGUAGGCGUAGAcgacgccGAGG--GCGCCGa- -3' miRNA: 3'- -CAUCUGCAUCUu------CUCCaaCGCGGUcu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 22037 | 0.68 | 0.982224 |
Target: 5'- --uGGCGUccuuuAAGAGGaUGCGCCGGGa -3' miRNA: 3'- cauCUGCAuc---UUCUCCaACGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 133790 | 0.69 | 0.975371 |
Target: 5'- cGgcGGCGgcGggGAcgacGGUcGCGCCGGGu -3' miRNA: 3'- -CauCUGCauCuuCU----CCAaCGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 57109 | 0.69 | 0.972707 |
Target: 5'- -gGGACGaGGAAGcGGGgggUGCGCCGa- -3' miRNA: 3'- caUCUGCaUCUUC-UCCa--ACGCGGUcu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 85087 | 0.72 | 0.917195 |
Target: 5'- cGUAGGCGUugaggaaccacgaGGggGAGGUcgGgGUCAGGa -3' miRNA: 3'- -CAUCUGCA-------------UCuuCUCCAa-CgCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 121849 | 0.71 | 0.92343 |
Target: 5'- -aGGACGgcGggGAGGacgGCGgCGGAu -3' miRNA: 3'- caUCUGCauCuuCUCCaa-CGCgGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 4581 | 0.71 | 0.934009 |
Target: 5'- -gGGGCGgcGGAGGAGGcgGCGCCGcGGg -3' miRNA: 3'- caUCUGCa-UCUUCUCCaaCGCGGU-CU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 67946 | 0.71 | 0.934009 |
Target: 5'- -cGGACGgAGAGG-GGUcGCGCCGGu -3' miRNA: 3'- caUCUGCaUCUUCuCCAaCGCGGUCu -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 127288 | 0.71 | 0.948054 |
Target: 5'- -cGGACGgcgAGGAGAGGaggaaacgcgUGCGCgAGAc -3' miRNA: 3'- caUCUGCa--UCUUCUCCa---------ACGCGgUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 89743 | 0.7 | 0.959962 |
Target: 5'- -gAGGuCGUGGGAGAGGUUcccgcggucgGCGCgCGGGc -3' miRNA: 3'- caUCU-GCAUCUUCUCCAA----------CGCG-GUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 131033 | 0.7 | 0.959962 |
Target: 5'- -aGGGCGUcggggccgcGGggGAGGacggcgccGCGCCGGAg -3' miRNA: 3'- caUCUGCA---------UCuuCUCCaa------CGCGGUCU- -5' |
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9112 | 5' | -51.4 | NC_002512.2 | + | 137054 | 0.69 | 0.96984 |
Target: 5'- -gGGACGgccagGGAGGAGGcgccGCGCCcgGGAa -3' miRNA: 3'- caUCUGCa----UCUUCUCCaa--CGCGG--UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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