miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 5' -51.4 NC_002512.2 + 4581 0.71 0.934009
Target:  5'- -gGGGCGgcGGAGGAGGcgGCGCCGcGGg -3'
miRNA:   3'- caUCUGCa-UCUUCUCCaaCGCGGU-CU- -5'
9112 5' -51.4 NC_002512.2 + 14319 0.68 0.988999
Target:  5'- uGUAGGCGUAGAcgacgccGAGG--GCGCCGa- -3'
miRNA:   3'- -CAUCUGCAUCUu------CUCCaaCGCGGUcu -5'
9112 5' -51.4 NC_002512.2 + 14399 0.66 0.995877
Target:  5'- -gAGGCGaAGuAGAGcagGCGCCAGGa -3'
miRNA:   3'- caUCUGCaUCuUCUCcaaCGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 18478 0.67 0.990327
Target:  5'- --cGACGUcguucuccucgaAGAAGcGGUUGCGCCu-- -3'
miRNA:   3'- cauCUGCA------------UCUUCuCCAACGCGGucu -5'
9112 5' -51.4 NC_002512.2 + 20294 0.68 0.982224
Target:  5'- cGUGGACGUGGc---GGUgaccGUGCCGGAc -3'
miRNA:   3'- -CAUCUGCAUCuucuCCAa---CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 22037 0.68 0.982224
Target:  5'- --uGGCGUccuuuAAGAGGaUGCGCCGGGa -3'
miRNA:   3'- cauCUGCAuc---UUCUCCaACGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 28086 0.68 0.987534
Target:  5'- -gAGACGgcGGAGAGGUcGcCGCCc-- -3'
miRNA:   3'- caUCUGCauCUUCUCCAaC-GCGGucu -5'
9112 5' -51.4 NC_002512.2 + 44127 0.68 0.985922
Target:  5'- -aAGGCGUAGAcGAGGUcGaCGgaCCAGAg -3'
miRNA:   3'- caUCUGCAUCUuCUCCAaC-GC--GGUCU- -5'
9112 5' -51.4 NC_002512.2 + 50424 0.76 0.739615
Target:  5'- -cAGACcaGGAAGAGGccgGCGCCGGAu -3'
miRNA:   3'- caUCUGcaUCUUCUCCaa-CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 53827 0.66 0.996418
Target:  5'- --cGGCGUacaAGAgagacccGGGGGcgGCGCCGGGa -3'
miRNA:   3'- cauCUGCA---UCU-------UCUCCaaCGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 57109 0.69 0.972707
Target:  5'- -gGGACGaGGAAGcGGGgggUGCGCCGa- -3'
miRNA:   3'- caUCUGCaUCUUC-UCCa--ACGCGGUcu -5'
9112 5' -51.4 NC_002512.2 + 63609 0.66 0.997457
Target:  5'- cGUAGugGUAGGcgaugacguuaAGAGGUcccugacgaGCGCCGu- -3'
miRNA:   3'- -CAUCugCAUCU-----------UCUCCAa--------CGCGGUcu -5'
9112 5' -51.4 NC_002512.2 + 67946 0.71 0.934009
Target:  5'- -cGGACGgAGAGG-GGUcGCGCCGGu -3'
miRNA:   3'- caUCUGCaUCUUCuCCAaCGCGGUCu -5'
9112 5' -51.4 NC_002512.2 + 67974 0.68 0.988999
Target:  5'- cGUGG-CGUccgccGGAGGAGGgccgGCGCgAGGa -3'
miRNA:   3'- -CAUCuGCA-----UCUUCUCCaa--CGCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 82429 0.66 0.997457
Target:  5'- --cGGCGgagGGGAcGAGGggGCGUCGGu -3'
miRNA:   3'- cauCUGCa--UCUU-CUCCaaCGCGGUCu -5'
9112 5' -51.4 NC_002512.2 + 83421 0.66 0.996849
Target:  5'- --cGugGUGGguGAGGUucuccggccugaagUGCGcCCGGAc -3'
miRNA:   3'- cauCugCAUCuuCUCCA--------------ACGC-GGUCU- -5'
9112 5' -51.4 NC_002512.2 + 85087 0.72 0.917195
Target:  5'- cGUAGGCGUugaggaaccacgaGGggGAGGUcgGgGUCAGGa -3'
miRNA:   3'- -CAUCUGCA-------------UCuuCUCCAa-CgCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 86119 0.66 0.996475
Target:  5'- -cGGGCGcGGAGGAGGUcGCGgacCUGGAa -3'
miRNA:   3'- caUCUGCaUCUUCUCCAaCGC---GGUCU- -5'
9112 5' -51.4 NC_002512.2 + 88259 0.66 0.996999
Target:  5'- --cGGCGguguuGGAGAGGUgGCGgCAGGc -3'
miRNA:   3'- cauCUGCau---CUUCUCCAaCGCgGUCU- -5'
9112 5' -51.4 NC_002512.2 + 89068 0.66 0.997457
Target:  5'- -aGGAgcUGUAGAAGAGGUacaugGCggagaagagcagGCCGGAg -3'
miRNA:   3'- caUCU--GCAUCUUCUCCAa----CG------------CGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.