miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 108875 1.09 0.006543
Target:  5'- aCGAAGGACCGGGGAUCGUCGAACGACc -3'
miRNA:   3'- -GCUUCCUGGCCCCUAGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 109038 0.78 0.464928
Target:  5'- -cGAGGACCGGGGGggcUCGggGGACGACc -3'
miRNA:   3'- gcUUCCUGGCCCCU---AGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 158845 0.78 0.473035
Target:  5'- gCGggGGAgCGGGGGgacgucgUCGUCGAcCGGCc -3'
miRNA:   3'- -GCuuCCUgGCCCCU-------AGCAGCUuGCUG- -5'
9117 5' -55 NC_002512.2 + 223779 0.78 0.473941
Target:  5'- uCGAGGGaccggacgucGCCGGGGA-CGUCGGcgGCGACc -3'
miRNA:   3'- -GCUUCC----------UGGCCCCUaGCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 22543 0.78 0.49592
Target:  5'- uCGAucGGGGCCGGGGAcuacUCGUCgccgguggugcugguGAACGGCu -3'
miRNA:   3'- -GCU--UCCUGGCCCCU----AGCAG---------------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 150215 0.78 0.505214
Target:  5'- cCGGAGGccGCCGGGGAggCGaucgagaucgcguucUCGGACGACg -3'
miRNA:   3'- -GCUUCC--UGGCCCCUa-GC---------------AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 220312 0.77 0.525915
Target:  5'- cCGggGGGCCGGGGGcCGggcuccggggggcCGGACGGCc -3'
miRNA:   3'- -GCuuCCUGGCCCCUaGCa------------GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 94477 0.77 0.528763
Target:  5'- gCGGAGGagauccaGCCGGGGAcgcagUCGUCGGGCG-Cg -3'
miRNA:   3'- -GCUUCC-------UGGCCCCU-----AGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 128203 0.76 0.587714
Target:  5'- cCGGcGGGACCGGGGA-CGg-GGACGACu -3'
miRNA:   3'- -GCU-UCCUGGCCCCUaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 224040 0.76 0.59752
Target:  5'- cCGAcgGGGccGCCGGGGAcgacUCGUCGGGCGuCu -3'
miRNA:   3'- -GCU--UCC--UGGCCCCU----AGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 75054 0.76 0.59752
Target:  5'- aCGGAGGGCgGGGGAgac-CGGGCGGCg -3'
miRNA:   3'- -GCUUCCUGgCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 118425 0.75 0.636911
Target:  5'- uGAAGGGCCGGGcGA-CGUCccuGGACGAg -3'
miRNA:   3'- gCUUCCUGGCCC-CUaGCAG---CUUGCUg -5'
9117 5' -55 NC_002512.2 + 76112 0.75 0.666442
Target:  5'- gCGggGGcGCCGGGGuggUGUCG-AUGACg -3'
miRNA:   3'- -GCuuCC-UGGCCCCua-GCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 156303 0.74 0.676243
Target:  5'- uGAAGucGGCCgugucgcacGGGGAgcUCGUCGAGCGGCu -3'
miRNA:   3'- gCUUC--CUGG---------CCCCU--AGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 200294 0.74 0.676243
Target:  5'- cCGucGGACUGGGGcUCGUCcgcccucgggGAGCGGCu -3'
miRNA:   3'- -GCuuCCUGGCCCCuAGCAG----------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 96542 0.74 0.686012
Target:  5'- uGAgccGGGGCCGGGGAUCc-CGGACGcCa -3'
miRNA:   3'- gCU---UCCUGGCCCCUAGcaGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 116894 0.74 0.686012
Target:  5'- gCGGcGGGGCCGGGGcgggcUCcUCGGACGGCg -3'
miRNA:   3'- -GCU-UCCUGGCCCCu----AGcAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 168142 0.74 0.705417
Target:  5'- gCGAGGGGCUGGGGGUgGg-GGGCGGa -3'
miRNA:   3'- -GCUUCCUGGCCCCUAgCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 71007 0.74 0.705417
Target:  5'- aCGAAGGACgGGGGGcCGccgccggccggUCGAcgACGACg -3'
miRNA:   3'- -GCUUCCUGgCCCCUaGC-----------AGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 99909 0.74 0.705417
Target:  5'- uCGAGGGcGCCGGGGGccCGcCGAAgGGCg -3'
miRNA:   3'- -GCUUCC-UGGCCCCUa-GCaGCUUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.