miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 214 0.69 0.908248
Target:  5'- aGAGGGAgCGGGGAcCGaaGGGCaGGCg -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCagCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 4216 0.68 0.948177
Target:  5'- gGGAGcGGCCgcGGGGAgcgggaCGUCGAGCcccGACg -3'
miRNA:   3'- gCUUC-CUGG--CCCCUa-----GCAGCUUG---CUG- -5'
9117 5' -55 NC_002512.2 + 4260 0.67 0.966102
Target:  5'- uCGggGGAUacaGGucGUCGgacCGGACGACg -3'
miRNA:   3'- -GCuuCCUGg--CCccUAGCa--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 4449 0.66 0.981219
Target:  5'- uGccGGGCgCGGGGGUCGgCGu-CGGCc -3'
miRNA:   3'- gCuuCCUG-GCCCCUAGCaGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 5867 0.67 0.960927
Target:  5'- uCGGAGucCCGGGcGUCGUCcgacucgucgcucguGGACGGCg -3'
miRNA:   3'- -GCUUCcuGGCCCcUAGCAG---------------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 7806 0.66 0.974467
Target:  5'- gGAacGGGGuCCGGGGAgcggacUgGUUGAGCGGa -3'
miRNA:   3'- gCU--UCCU-GGCCCCU------AgCAGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 11381 0.66 0.976889
Target:  5'- aCGAGGGGuCCGacGGcUCGgacgCGGACGACc -3'
miRNA:   3'- -GCUUCCU-GGCc-CCuAGCa---GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 11454 0.71 0.846902
Target:  5'- gGAcgGGGGCCGGGGAaggggCGgagaccgCGAggACGACg -3'
miRNA:   3'- gCU--UCCUGGCCCCUa----GCa------GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 11567 0.69 0.929981
Target:  5'- aCGAGGGcuaCGGGGAgca-CGAGCGGCc -3'
miRNA:   3'- -GCUUCCug-GCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 13990 0.74 0.715037
Target:  5'- aGggGGACgGGGGGaCGagGGACGAg -3'
miRNA:   3'- gCuuCCUGgCCCCUaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 15556 0.67 0.959553
Target:  5'- uGAGGaGGCCGGa-GUCGUCGGccugcucguGCGGCa -3'
miRNA:   3'- gCUUC-CUGGCCccUAGCAGCU---------UGCUG- -5'
9117 5' -55 NC_002512.2 + 17023 0.67 0.971866
Target:  5'- cCGGAGGA--GGGGAcgcUCGgaggggaCGGACGGCg -3'
miRNA:   3'- -GCUUCCUggCCCCU---AGCa------GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 22336 0.7 0.869164
Target:  5'- gCGAGGGACgCGaGGGAggaGUCGcAGCGGg -3'
miRNA:   3'- -GCUUCCUG-GC-CCCUag-CAGC-UUGCUg -5'
9117 5' -55 NC_002512.2 + 22543 0.78 0.49592
Target:  5'- uCGAucGGGGCCGGGGAcuacUCGUCgccgguggugcugguGAACGGCu -3'
miRNA:   3'- -GCU--UCCUGGCCCCU----AGCAG---------------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 24707 0.69 0.92488
Target:  5'- -cGAGGACgCGGGcGAgggagacgcggCGUCGAgaGCGACg -3'
miRNA:   3'- gcUUCCUG-GCCC-CUa----------GCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 27240 0.67 0.96908
Target:  5'- gGAGcGGGCCGGGcuaggagcucaGAUCGUCGGucCGGu -3'
miRNA:   3'- gCUU-CCUGGCCC-----------CUAGCAGCUu-GCUg -5'
9117 5' -55 NC_002512.2 + 28228 0.69 0.913446
Target:  5'- aGAAGGaaccgcgGCCGGGGccGUCGcgccgCGAguACGACg -3'
miRNA:   3'- gCUUCC-------UGGCCCC--UAGCa----GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 28341 0.65 0.984911
Target:  5'- gCGGAGGAgCGGaagcGGAUCcuGUCGAACc-- -3'
miRNA:   3'- -GCUUCCUgGCC----CCUAG--CAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 29752 0.68 0.934861
Target:  5'- gCGAGGGGgcCCGGcGAUCGaCGcGACGGCg -3'
miRNA:   3'- -GCUUCCU--GGCCcCUAGCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 30414 0.66 0.983141
Target:  5'- gGAcgGGGACgCGGGcGUCGUC--GCGGCc -3'
miRNA:   3'- gCU--UCCUG-GCCCcUAGCAGcuUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.