miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 229617 0.69 0.908248
Target:  5'- aGAGGGAgCGGGGAcCGaaGGGCaGGCg -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCagCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 228510 0.67 0.96908
Target:  5'- aGAGGGACgCGGaGGAgagaCGgaggCGAcgagACGACa -3'
miRNA:   3'- gCUUCCUG-GCC-CCUa---GCa---GCU----UGCUG- -5'
9117 5' -55 NC_002512.2 + 227360 0.7 0.876197
Target:  5'- aCGGAGGAggcCCGGGGccgccggCGUCGGGgGAg -3'
miRNA:   3'- -GCUUCCU---GGCCCCua-----GCAGCUUgCUg -5'
9117 5' -55 NC_002512.2 + 227226 0.69 0.919557
Target:  5'- gCGgcGGACCGGGaGGcgCGgCGGACGGg -3'
miRNA:   3'- -GCuuCCUGGCCC-CUa-GCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 226738 0.7 0.876197
Target:  5'- aCGAcggcGGGACCGGGcucCGgcCGGACGACg -3'
miRNA:   3'- -GCU----UCCUGGCCCcuaGCa-GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 226688 0.68 0.952181
Target:  5'- gCGccGGGCCGucgcccgcGGcGG-CGUCGAGCGACg -3'
miRNA:   3'- -GCuuCCUGGC--------CC-CUaGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 226603 0.66 0.983141
Target:  5'- cCGggGGAggaGGGGAcggCGaCGcAGCGACg -3'
miRNA:   3'- -GCuuCCUgg-CCCCUa--GCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 226216 0.66 0.976889
Target:  5'- gGGAGGACCuccGGAcCGUCGGccGCGAg -3'
miRNA:   3'- gCUUCCUGGcc-CCUaGCAGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 226067 0.72 0.788943
Target:  5'- -aGGGGAUCGGGGA-CGUaggGGACGGCu -3'
miRNA:   3'- gcUUCCUGGCCCCUaGCAg--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 225512 0.66 0.979137
Target:  5'- gCGggGGucCCGGGcuUCG-CGGACGGg -3'
miRNA:   3'- -GCuuCCu-GGCCCcuAGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 224087 0.68 0.955972
Target:  5'- aCGGAGGACCucagGGGGAccgUGUCGGucguggUGACc -3'
miRNA:   3'- -GCUUCCUGG----CCCCUa--GCAGCUu-----GCUG- -5'
9117 5' -55 NC_002512.2 + 224040 0.76 0.59752
Target:  5'- cCGAcgGGGccGCCGGGGAcgacUCGUCGGGCGuCu -3'
miRNA:   3'- -GCU--UCC--UGGCCCCU----AGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 223899 0.66 0.981219
Target:  5'- aGGAGGAgCGGGag-CGgcgCGGGCGAg -3'
miRNA:   3'- gCUUCCUgGCCCcuaGCa--GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 223779 0.78 0.473941
Target:  5'- uCGAGGGaccggacgucGCCGGGGA-CGUCGGcgGCGACc -3'
miRNA:   3'- -GCUUCC----------UGGCCCCUaGCAGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 223728 0.7 0.900427
Target:  5'- gGGAGGAcgaCCGGGaGAcCGUCGuggaggucguguccGACGACa -3'
miRNA:   3'- gCUUCCU---GGCCC-CUaGCAGC--------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 221441 0.65 0.984911
Target:  5'- gCGGAccGcGGCCGGGGcgCGgUCGucCGACc -3'
miRNA:   3'- -GCUU--C-CUGGCCCCuaGC-AGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 221294 0.68 0.952181
Target:  5'- gGggGaGGCCGGGGucggCGggGAGCGGg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 221268 0.73 0.752779
Target:  5'- uCGggGGACgCGGGGcgCGUgGAGgGGg -3'
miRNA:   3'- -GCuuCCUG-GCCCCuaGCAgCUUgCUg -5'
9117 5' -55 NC_002512.2 + 220786 0.69 0.929981
Target:  5'- ---uGGACCugcuGGGGAUCGUCcu-CGACc -3'
miRNA:   3'- gcuuCCUGG----CCCCUAGCAGcuuGCUG- -5'
9117 5' -55 NC_002512.2 + 220312 0.77 0.525915
Target:  5'- cCGggGGGCCGGGGGcCGggcuccggggggcCGGACGGCc -3'
miRNA:   3'- -GCuuCCUGGCCCCUaGCa------------GCUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.