miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 124570 0.7 0.876197
Target:  5'- gGAGGaGGCCcGGGA-CGUCaaGAGCGACg -3'
miRNA:   3'- gCUUC-CUGGcCCCUaGCAG--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 142278 0.72 0.788943
Target:  5'- ---cGGGCCGGGGAcggCGUCGA-CGGg -3'
miRNA:   3'- gcuuCCUGGCCCCUa--GCAGCUuGCUg -5'
9117 5' -55 NC_002512.2 + 226067 0.72 0.788943
Target:  5'- -aGGGGAUCGGGGA-CGUaggGGACGGCu -3'
miRNA:   3'- gcUUCCUGGCCCCUaGCAg--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 42308 0.72 0.823013
Target:  5'- aGAGGGAgCGGGGGggaucUCGacgCGcGCGACg -3'
miRNA:   3'- gCUUCCUgGCCCCU-----AGCa--GCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 86874 0.72 0.823013
Target:  5'- uGAGGGcGCUGGGGAagaUgG-CGAACGACu -3'
miRNA:   3'- gCUUCC-UGGCCCCU---AgCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 11454 0.71 0.846902
Target:  5'- gGAcgGGGGCCGGGGAaggggCGgagaccgCGAggACGACg -3'
miRNA:   3'- gCU--UCCUGGCCCCUa----GCa------GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 22336 0.7 0.869164
Target:  5'- gCGAGGGACgCGaGGGAggaGUCGcAGCGGg -3'
miRNA:   3'- -GCUUCCUG-GC-CCCUag-CAGC-UUGCUg -5'
9117 5' -55 NC_002512.2 + 131605 0.7 0.869164
Target:  5'- aGGAGGACgaCGGGGA----CGAGCGGCg -3'
miRNA:   3'- gCUUCCUG--GCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 81844 0.7 0.869164
Target:  5'- cCGGAccGGGUCGGGGAgCGUCGGcgggaaGCGACa -3'
miRNA:   3'- -GCUU--CCUGGCCCCUaGCAGCU------UGCUG- -5'
9117 5' -55 NC_002512.2 + 115729 0.72 0.788943
Target:  5'- aGGAGGACCGGgcccGGGUCGUCcucugcCGGCu -3'
miRNA:   3'- gCUUCCUGGCC----CCUAGCAGcuu---GCUG- -5'
9117 5' -55 NC_002512.2 + 130230 0.73 0.743471
Target:  5'- cCGAGcuGCCGGGGAUCGgcUCGGGCGcCg -3'
miRNA:   3'- -GCUUccUGGCCCCUAGC--AGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 194836 0.73 0.743471
Target:  5'- uCGAcaGACCGGGGAUCGUguUGAACaACg -3'
miRNA:   3'- -GCUucCUGGCCCCUAGCA--GCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 128203 0.76 0.587714
Target:  5'- cCGGcGGGACCGGGGA-CGg-GGACGACu -3'
miRNA:   3'- -GCU-UCCUGGCCCCUaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 75054 0.76 0.59752
Target:  5'- aCGGAGGGCgGGGGAgac-CGGGCGGCg -3'
miRNA:   3'- -GCUUCCUGgCCCCUagcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 116894 0.74 0.686012
Target:  5'- gCGGcGGGGCCGGGGcgggcUCcUCGGACGGCg -3'
miRNA:   3'- -GCU-UCCUGGCCCCu----AGcAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 71007 0.74 0.705417
Target:  5'- aCGAAGGACgGGGGGcCGccgccggccggUCGAcgACGACg -3'
miRNA:   3'- -GCUUCCUGgCCCCUaGC-----------AGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 99909 0.74 0.705417
Target:  5'- uCGAGGGcGCCGGGGGccCGcCGAAgGGCg -3'
miRNA:   3'- -GCUUCC-UGGCCCCUa-GCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 13990 0.74 0.715037
Target:  5'- aGggGGACgGGGGGaCGagGGACGAg -3'
miRNA:   3'- gCuuCCUGgCCCCUaGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 138037 0.74 0.724591
Target:  5'- uCGggGGcaugaGCCGGGacuGGUCGaCGGACGGCg -3'
miRNA:   3'- -GCuuCC-----UGGCCC---CUAGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 57037 0.73 0.734072
Target:  5'- gCGGAGGccgcguccgacgACCGGGGggCGcCGGGCGAa -3'
miRNA:   3'- -GCUUCC------------UGGCCCCuaGCaGCUUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.