miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 226216 0.66 0.976889
Target:  5'- gGGAGGACCuccGGAcCGUCGGccGCGAg -3'
miRNA:   3'- gCUUCCUGGcc-CCUaGCAGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 217800 0.65 0.984911
Target:  5'- uGgcGGAUCGGcGucgccgucccGAUCGUCG-ACGGCg -3'
miRNA:   3'- gCuuCCUGGCC-C----------CUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 140991 0.65 0.984911
Target:  5'- cCGAAcGGACCGc-GAUCG-CGAAgGACg -3'
miRNA:   3'- -GCUU-CCUGGCccCUAGCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 160628 0.66 0.981219
Target:  5'- uCGAGGaGAUCcGGGA-CG-CGGACGACc -3'
miRNA:   3'- -GCUUC-CUGGcCCCUaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 223899 0.66 0.981219
Target:  5'- aGGAGGAgCGGGag-CGgcgCGGGCGAg -3'
miRNA:   3'- gCUUCCUgGCCCcuaGCa--GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 221441 0.65 0.984911
Target:  5'- gCGGAccGcGGCCGGGGcgCGgUCGucCGACc -3'
miRNA:   3'- -GCUU--C-CUGGCCCCuaGC-AGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 90549 0.66 0.983141
Target:  5'- aGGAGGAgCGGGaGGaCGagggCGAggGCGACg -3'
miRNA:   3'- gCUUCCUgGCCC-CUaGCa---GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 215085 0.66 0.981219
Target:  5'- uCGGcGGGACCGaGGAcuUCGUCGccgccGCGGCc -3'
miRNA:   3'- -GCU-UCCUGGCcCCU--AGCAGCu----UGCUG- -5'
9117 5' -55 NC_002512.2 + 39548 0.66 0.979137
Target:  5'- uGAAGGACgCGGGacggugccaaGggCGgcgaCGGGCGACa -3'
miRNA:   3'- gCUUCCUG-GCCC----------CuaGCa---GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 152184 0.66 0.974467
Target:  5'- uCGcAGGACCGGGG-UCcUCGgagaGugGACc -3'
miRNA:   3'- -GCuUCCUGGCCCCuAGcAGC----UugCUG- -5'
9117 5' -55 NC_002512.2 + 108875 1.09 0.006543
Target:  5'- aCGAAGGACCGGGGAUCGUCGAACGACc -3'
miRNA:   3'- -GCUUCCUGGCCCCUAGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 161500 0.66 0.983141
Target:  5'- aGGAGGACCuGGuGcgCugcgCGGACGGCa -3'
miRNA:   3'- gCUUCCUGGcCC-CuaGca--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 226603 0.66 0.983141
Target:  5'- cCGggGGAggaGGGGAcggCGaCGcAGCGACg -3'
miRNA:   3'- -GCuuCCUgg-CCCCUa--GCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 166011 0.66 0.979137
Target:  5'- cCGAcGGcuCCGGGGAcgCGUUcGGCGGCc -3'
miRNA:   3'- -GCUuCCu-GGCCCCUa-GCAGcUUGCUG- -5'
9117 5' -55 NC_002512.2 + 225512 0.66 0.979137
Target:  5'- gCGggGGucCCGGGcuUCG-CGGACGGg -3'
miRNA:   3'- -GCuuCCu-GGCCCcuAGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 90936 0.66 0.983141
Target:  5'- gGgcGcGACCGGGGcgugCGUgGGcGCGACg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCAgCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 135026 0.66 0.974467
Target:  5'- aCGAcgccAGGAUCGGGGGccCGUCuGACG-Cg -3'
miRNA:   3'- -GCU----UCCUGGCCCCUa-GCAGcUUGCuG- -5'
9117 5' -55 NC_002512.2 + 100490 0.66 0.974467
Target:  5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3'
miRNA:   3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 149742 0.66 0.983141
Target:  5'- aGGAGGACgacgaGGGGGaCGaccccgCGAugGACc -3'
miRNA:   3'- gCUUCCUGg----CCCCUaGCa-----GCUugCUG- -5'
9117 5' -55 NC_002512.2 + 136440 0.66 0.980406
Target:  5'- aCGAGGGGacCCGGGGccacuacauccgCGcCGAguACGACg -3'
miRNA:   3'- -GCUUCCU--GGCCCCua----------GCaGCU--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.