miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 217800 0.65 0.984911
Target:  5'- uGgcGGAUCGGcGucgccgucccGAUCGUCG-ACGGCg -3'
miRNA:   3'- gCuuCCUGGCC-C----------CUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 103045 0.67 0.959553
Target:  5'- aGAA-GACCGGGGGcaggagcgCGggGAACGGCa -3'
miRNA:   3'- gCUUcCUGGCCCCUa-------GCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 156029 0.67 0.9626
Target:  5'- aCGuccuGGGGCCaGugcaugcGGGUCGUCGAcACGGCg -3'
miRNA:   3'- -GCu---UCCUGGcC-------CCUAGCAGCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 123708 0.67 0.971866
Target:  5'- cCGAAGGACCcGGcGUCGcCGuacgccuACGGCa -3'
miRNA:   3'- -GCUUCCUGGcCCcUAGCaGCu------UGCUG- -5'
9117 5' -55 NC_002512.2 + 166011 0.66 0.979137
Target:  5'- cCGAcGGcuCCGGGGAcgCGUUcGGCGGCc -3'
miRNA:   3'- -GCUuCCu-GGCCCCUa-GCAGcUUGCUG- -5'
9117 5' -55 NC_002512.2 + 204632 0.68 0.939519
Target:  5'- aCGAAGGGgaCGGGGAcCG--GGACGGCg -3'
miRNA:   3'- -GCUUCCUg-GCCCCUaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 226688 0.68 0.952181
Target:  5'- gCGccGGGCCGucgcccgcGGcGG-CGUCGAGCGACg -3'
miRNA:   3'- -GCuuCCUGGC--------CC-CUaGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 215085 0.66 0.981219
Target:  5'- uCGGcGGGACCGaGGAcuUCGUCGccgccGCGGCc -3'
miRNA:   3'- -GCU-UCCUGGCcCCU--AGCAGCu----UGCUG- -5'
9117 5' -55 NC_002512.2 + 228510 0.67 0.96908
Target:  5'- aGAGGGACgCGGaGGAgagaCGgaggCGAcgagACGACa -3'
miRNA:   3'- gCUUCCUG-GCC-CCUa---GCa---GCU----UGCUG- -5'
9117 5' -55 NC_002512.2 + 194023 0.67 0.96908
Target:  5'- gCGAuGGACCGGGaGUCGgCGAuccaGGCc -3'
miRNA:   3'- -GCUuCCUGGCCCcUAGCaGCUug--CUG- -5'
9117 5' -55 NC_002512.2 + 90549 0.66 0.983141
Target:  5'- aGGAGGAgCGGGaGGaCGagggCGAggGCGACg -3'
miRNA:   3'- gCUUCCUgGCCC-CUaGCa---GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 90936 0.66 0.983141
Target:  5'- gGgcGcGACCGGGGcgugCGUgGGcGCGACg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCAgCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 205749 0.68 0.939519
Target:  5'- aGGuAGGGCCGGGG--UGUCGcGCGcACg -3'
miRNA:   3'- gCU-UCCUGGCCCCuaGCAGCuUGC-UG- -5'
9117 5' -55 NC_002512.2 + 133284 0.68 0.939519
Target:  5'- gCGAuugAGGGCgaGGGGAUCaUCGAA-GACg -3'
miRNA:   3'- -GCU---UCCUGg-CCCCUAGcAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 93756 0.67 0.962928
Target:  5'- aCGGAGGGCUcggagggagggaGGGaGGUCGggagcggaUCGggUGACg -3'
miRNA:   3'- -GCUUCCUGG------------CCC-CUAGC--------AGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 226216 0.66 0.976889
Target:  5'- gGGAGGACCuccGGAcCGUCGGccGCGAg -3'
miRNA:   3'- gCUUCCUGGcc-CCUaGCAGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 225512 0.66 0.979137
Target:  5'- gCGggGGucCCGGGcuUCG-CGGACGGg -3'
miRNA:   3'- -GCuuCCu-GGCCCcuAGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 161500 0.66 0.983141
Target:  5'- aGGAGGACCuGGuGcgCugcgCGGACGGCa -3'
miRNA:   3'- gCUUCCUGGcCC-CuaGca--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 192517 0.67 0.971866
Target:  5'- uCGGAGGACauGGGGUC--CG-ACGACg -3'
miRNA:   3'- -GCUUCCUGgcCCCUAGcaGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 218590 0.67 0.966102
Target:  5'- uCGGAGGucuccCCGGGGucUCGcccgcggacUCGAAgGACg -3'
miRNA:   3'- -GCUUCCu----GGCCCCu-AGC---------AGCUUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.