miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 90549 0.66 0.983141
Target:  5'- aGGAGGAgCGGGaGGaCGagggCGAggGCGACg -3'
miRNA:   3'- gCUUCCUgGCCC-CUaGCa---GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 205749 0.68 0.939519
Target:  5'- aGGuAGGGCCGGGG--UGUCGcGCGcACg -3'
miRNA:   3'- gCU-UCCUGGCCCCuaGCAGCuUGC-UG- -5'
9117 5' -55 NC_002512.2 + 223728 0.7 0.900427
Target:  5'- gGGAGGAcgaCCGGGaGAcCGUCGuggaggucguguccGACGACa -3'
miRNA:   3'- gCUUCCU---GGCCC-CUaGCAGC--------------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 158790 0.69 0.908248
Target:  5'- uGguGGcCCGGGGcGUCGUCGAcuucuCGGCc -3'
miRNA:   3'- gCuuCCuGGCCCC-UAGCAGCUu----GCUG- -5'
9117 5' -55 NC_002512.2 + 133284 0.68 0.939519
Target:  5'- gCGAuugAGGGCgaGGGGAUCaUCGAA-GACg -3'
miRNA:   3'- -GCU---UCCUGg-CCCCUAGcAGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 226216 0.66 0.976889
Target:  5'- gGGAGGACCuccGGAcCGUCGGccGCGAg -3'
miRNA:   3'- gCUUCCUGGcc-CCUaGCAGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 90936 0.66 0.983141
Target:  5'- gGgcGcGACCGGGGcgugCGUgGGcGCGACg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCAgCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 161500 0.66 0.983141
Target:  5'- aGGAGGACCuGGuGcgCugcgCGGACGGCa -3'
miRNA:   3'- gCUUCCUGGcCC-CuaGca--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 192517 0.67 0.971866
Target:  5'- uCGGAGGACauGGGGUC--CG-ACGACg -3'
miRNA:   3'- -GCUUCCUGgcCCCUAGcaGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 103045 0.67 0.959553
Target:  5'- aGAA-GACCGGGGGcaggagcgCGggGAACGGCa -3'
miRNA:   3'- gCUUcCUGGCCCCUa-------GCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 93756 0.67 0.962928
Target:  5'- aCGGAGGGCUcggagggagggaGGGaGGUCGggagcggaUCGggUGACg -3'
miRNA:   3'- -GCUUCCUGG------------CCC-CUAGC--------AGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 100490 0.66 0.974467
Target:  5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3'
miRNA:   3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 160628 0.66 0.981219
Target:  5'- uCGAGGaGAUCcGGGA-CG-CGGACGACc -3'
miRNA:   3'- -GCUUC-CUGGcCCCUaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 211889 0.69 0.924358
Target:  5'- gGAgcGGGucaccuuCCGGGGcugccgcGUCGUCGAGCGuCg -3'
miRNA:   3'- gCU--UCCu------GGCCCC-------UAGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 220786 0.69 0.929981
Target:  5'- ---uGGACCugcuGGGGAUCGUCcu-CGACc -3'
miRNA:   3'- gcuuCCUGG----CCCCUAGCAGcuuGCUG- -5'
9117 5' -55 NC_002512.2 + 123557 0.68 0.948177
Target:  5'- aCGAGcGACCGGGGAgagcCGcCGAA-GGCg -3'
miRNA:   3'- -GCUUcCUGGCCCCUa---GCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 77530 0.69 0.914012
Target:  5'- uCGAucGGGACCGGaGAcgccuacgUCG-CGGACGGCg -3'
miRNA:   3'- -GCU--UCCUGGCCcCU--------AGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 108875 1.09 0.006543
Target:  5'- aCGAAGGACCGGGGAUCGUCGAACGACc -3'
miRNA:   3'- -GCUUCCUGGCCCCUAGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 106383 0.7 0.896065
Target:  5'- gGAAGGACCGGGGGc---CGAGCa-- -3'
miRNA:   3'- gCUUCCUGGCCCCUagcaGCUUGcug -5'
9117 5' -55 NC_002512.2 + 219840 0.69 0.919557
Target:  5'- uCGggGGGuCCGGcccgggggcGGAUCG-CGGACGGg -3'
miRNA:   3'- -GCuuCCU-GGCC---------CCUAGCaGCUUGCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.