Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9117 | 5' | -55 | NC_002512.2 | + | 90549 | 0.66 | 0.983141 |
Target: 5'- aGGAGGAgCGGGaGGaCGagggCGAggGCGACg -3' miRNA: 3'- gCUUCCUgGCCC-CUaGCa---GCU--UGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 205749 | 0.68 | 0.939519 |
Target: 5'- aGGuAGGGCCGGGG--UGUCGcGCGcACg -3' miRNA: 3'- gCU-UCCUGGCCCCuaGCAGCuUGC-UG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 223728 | 0.7 | 0.900427 |
Target: 5'- gGGAGGAcgaCCGGGaGAcCGUCGuggaggucguguccGACGACa -3' miRNA: 3'- gCUUCCU---GGCCC-CUaGCAGC--------------UUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 158790 | 0.69 | 0.908248 |
Target: 5'- uGguGGcCCGGGGcGUCGUCGAcuucuCGGCc -3' miRNA: 3'- gCuuCCuGGCCCC-UAGCAGCUu----GCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 133284 | 0.68 | 0.939519 |
Target: 5'- gCGAuugAGGGCgaGGGGAUCaUCGAA-GACg -3' miRNA: 3'- -GCU---UCCUGg-CCCCUAGcAGCUUgCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 226216 | 0.66 | 0.976889 |
Target: 5'- gGGAGGACCuccGGAcCGUCGGccGCGAg -3' miRNA: 3'- gCUUCCUGGcc-CCUaGCAGCU--UGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 90936 | 0.66 | 0.983141 |
Target: 5'- gGgcGcGACCGGGGcgugCGUgGGcGCGACg -3' miRNA: 3'- gCuuC-CUGGCCCCua--GCAgCU-UGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 161500 | 0.66 | 0.983141 |
Target: 5'- aGGAGGACCuGGuGcgCugcgCGGACGGCa -3' miRNA: 3'- gCUUCCUGGcCC-CuaGca--GCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 192517 | 0.67 | 0.971866 |
Target: 5'- uCGGAGGACauGGGGUC--CG-ACGACg -3' miRNA: 3'- -GCUUCCUGgcCCCUAGcaGCuUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 103045 | 0.67 | 0.959553 |
Target: 5'- aGAA-GACCGGGGGcaggagcgCGggGAACGGCa -3' miRNA: 3'- gCUUcCUGGCCCCUa-------GCagCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 93756 | 0.67 | 0.962928 |
Target: 5'- aCGGAGGGCUcggagggagggaGGGaGGUCGggagcggaUCGggUGACg -3' miRNA: 3'- -GCUUCCUGG------------CCC-CUAGC--------AGCuuGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 100490 | 0.66 | 0.974467 |
Target: 5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3' miRNA: 3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 160628 | 0.66 | 0.981219 |
Target: 5'- uCGAGGaGAUCcGGGA-CG-CGGACGACc -3' miRNA: 3'- -GCUUC-CUGGcCCCUaGCaGCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 211889 | 0.69 | 0.924358 |
Target: 5'- gGAgcGGGucaccuuCCGGGGcugccgcGUCGUCGAGCGuCg -3' miRNA: 3'- gCU--UCCu------GGCCCC-------UAGCAGCUUGCuG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 220786 | 0.69 | 0.929981 |
Target: 5'- ---uGGACCugcuGGGGAUCGUCcu-CGACc -3' miRNA: 3'- gcuuCCUGG----CCCCUAGCAGcuuGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 123557 | 0.68 | 0.948177 |
Target: 5'- aCGAGcGACCGGGGAgagcCGcCGAA-GGCg -3' miRNA: 3'- -GCUUcCUGGCCCCUa---GCaGCUUgCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 77530 | 0.69 | 0.914012 |
Target: 5'- uCGAucGGGACCGGaGAcgccuacgUCG-CGGACGGCg -3' miRNA: 3'- -GCU--UCCUGGCCcCU--------AGCaGCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 108875 | 1.09 | 0.006543 |
Target: 5'- aCGAAGGACCGGGGAUCGUCGAACGACc -3' miRNA: 3'- -GCUUCCUGGCCCCUAGCAGCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 106383 | 0.7 | 0.896065 |
Target: 5'- gGAAGGACCGGGGGc---CGAGCa-- -3' miRNA: 3'- gCUUCCUGGCCCCUagcaGCUUGcug -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 219840 | 0.69 | 0.919557 |
Target: 5'- uCGggGGGuCCGGcccgggggcGGAUCG-CGGACGGg -3' miRNA: 3'- -GCuuCCU-GGCC---------CCUAGCaGCUUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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