miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 55037 0.67 0.966102
Target:  5'- gGucGGGCCGccuaccgacGGGAgagaCGaUCGAGCGACa -3'
miRNA:   3'- gCuuCCUGGC---------CCCUa---GC-AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 4260 0.67 0.966102
Target:  5'- uCGggGGAUacaGGucGUCGgacCGGACGACg -3'
miRNA:   3'- -GCuuCCUGg--CCccUAGCa--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 120628 0.67 0.961937
Target:  5'- gGGAGGcggcgggacgggacGCCGGGGG-CG-CGGACGGa -3'
miRNA:   3'- gCUUCC--------------UGGCCCCUaGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 5867 0.67 0.960927
Target:  5'- uCGGAGucCCGGGcGUCGUCcgacucgucgcucguGGACGGCg -3'
miRNA:   3'- -GCUUCcuGGCCCcUAGCAG---------------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 140992 0.67 0.959553
Target:  5'- uCGggGGGCaCGGGGGggagcgCGgggaGGACGGg -3'
miRNA:   3'- -GCuuCCUG-GCCCCUa-----GCag--CUUGCUg -5'
9117 5' -55 NC_002512.2 + 80707 0.67 0.959553
Target:  5'- cCGggGGGCgaGGGcGcgCGggcccgCGGGCGGCa -3'
miRNA:   3'- -GCuuCCUGg-CCC-CuaGCa-----GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 15556 0.67 0.959553
Target:  5'- uGAGGaGGCCGGa-GUCGUCGGccugcucguGCGGCa -3'
miRNA:   3'- gCUUC-CUGGCCccUAGCAGCU---------UGCUG- -5'
9117 5' -55 NC_002512.2 + 195221 0.67 0.959553
Target:  5'- uGAGGGacgGCCGGaGGUUGacuUUGAACGACg -3'
miRNA:   3'- gCUUCC---UGGCCcCUAGC---AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 194023 0.67 0.96908
Target:  5'- gCGAuGGACCGGGaGUCGgCGAuccaGGCc -3'
miRNA:   3'- -GCUuCCUGGCCCcUAGCaGCUug--CUG- -5'
9117 5' -55 NC_002512.2 + 192517 0.67 0.971866
Target:  5'- uCGGAGGACauGGGGUC--CG-ACGACg -3'
miRNA:   3'- -GCUUCCUGgcCCCUAGcaGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 123708 0.67 0.971866
Target:  5'- cCGAAGGACCcGGcGUCGcCGuacgccuACGGCa -3'
miRNA:   3'- -GCUUCCUGGcCCcUAGCaGCu------UGCUG- -5'
9117 5' -55 NC_002512.2 + 17023 0.67 0.971866
Target:  5'- cCGGAGGA--GGGGAcgcUCGgaggggaCGGACGGCg -3'
miRNA:   3'- -GCUUCCUggCCCCU---AGCa------GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 121882 0.67 0.971866
Target:  5'- gGGAGGuCgCGGGGGaCGcUCG-GCGACg -3'
miRNA:   3'- gCUUCCuG-GCCCCUaGC-AGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 126248 0.67 0.96908
Target:  5'- aGGAGGGCCGGGuGUC--CGAAgcCGACc -3'
miRNA:   3'- gCUUCCUGGCCCcUAGcaGCUU--GCUG- -5'
9117 5' -55 NC_002512.2 + 36839 0.67 0.971866
Target:  5'- uGggGaACUGGGGGgacaCGUCGGGcCGAUa -3'
miRNA:   3'- gCuuCcUGGCCCCUa---GCAGCUU-GCUG- -5'
9117 5' -55 NC_002512.2 + 38663 0.67 0.970217
Target:  5'- cCGAGGaGGCCGGGGA-CGcccccggggaagacCGAGcCGACg -3'
miRNA:   3'- -GCUUC-CUGGCCCCUaGCa-------------GCUU-GCUG- -5'
9117 5' -55 NC_002512.2 + 97211 0.67 0.96908
Target:  5'- gCGgcGGGCCGGGcGGgaCGUCGA--GGCg -3'
miRNA:   3'- -GCuuCCUGGCCC-CUa-GCAGCUugCUG- -5'
9117 5' -55 NC_002512.2 + 43268 0.67 0.96908
Target:  5'- gCGAGcuGGucuCCuggaGGGGGUCGUCGAACa-- -3'
miRNA:   3'- -GCUU--CCu--GG----CCCCUAGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 27240 0.67 0.96908
Target:  5'- gGAGcGGGCCGGGcuaggagcucaGAUCGUCGGucCGGu -3'
miRNA:   3'- gCUU-CCUGGCCC-----------CUAGCAGCUu-GCUg -5'
9117 5' -55 NC_002512.2 + 74649 0.67 0.966102
Target:  5'- cCGggGGAgaUCGGGGGagcUCGggGGACGGg -3'
miRNA:   3'- -GCuuCCU--GGCCCCU---AGCagCUUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.