Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9117 | 5' | -55 | NC_002512.2 | + | 7806 | 0.66 | 0.974467 |
Target: 5'- gGAacGGGGuCCGGGGAgcggacUgGUUGAGCGGa -3' miRNA: 3'- gCU--UCCU-GGCCCCU------AgCAGCUUGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 83799 | 0.66 | 0.981219 |
Target: 5'- -cGAGGACCGcgucGGGcgCGcCGGcgGCGGCg -3' miRNA: 3'- gcUUCCUGGC----CCCuaGCaGCU--UGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 54669 | 0.66 | 0.983141 |
Target: 5'- aGAuGGACCGGcGGAcgGUgGAcGCGGCg -3' miRNA: 3'- gCUuCCUGGCC-CCUagCAgCU-UGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 86400 | 0.66 | 0.983867 |
Target: 5'- uGAAcGGACgGGGGGUCcGUcucgccgagagaugaCGAGCgGACg -3' miRNA: 3'- gCUU-CCUGgCCCCUAG-CA---------------GCUUG-CUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 108589 | 0.66 | 0.981219 |
Target: 5'- uCGggGGGCCccGGGGAgCGgCGGccGCGGg -3' miRNA: 3'- -GCuuCCUGG--CCCCUaGCaGCU--UGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 135026 | 0.66 | 0.974467 |
Target: 5'- aCGAcgccAGGAUCGGGGGccCGUCuGACG-Cg -3' miRNA: 3'- -GCU----UCCUGGCCCCUa-GCAGcUUGCuG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 152184 | 0.66 | 0.974467 |
Target: 5'- uCGcAGGACCGGGG-UCcUCGgagaGugGACc -3' miRNA: 3'- -GCuUCCUGGCCCCuAGcAGC----UugCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 100490 | 0.66 | 0.974467 |
Target: 5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3' miRNA: 3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 160628 | 0.66 | 0.981219 |
Target: 5'- uCGAGGaGAUCcGGGA-CG-CGGACGACc -3' miRNA: 3'- -GCUUC-CUGGcCCCUaGCaGCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 225512 | 0.66 | 0.979137 |
Target: 5'- gCGggGGucCCGGGcuUCG-CGGACGGg -3' miRNA: 3'- -GCuuCCu-GGCCCcuAGCaGCUUGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 39548 | 0.66 | 0.979137 |
Target: 5'- uGAAGGACgCGGGacggugccaaGggCGgcgaCGGGCGACa -3' miRNA: 3'- gCUUCCUG-GCCC----------CuaGCa---GCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 226216 | 0.66 | 0.976889 |
Target: 5'- gGGAGGACCuccGGAcCGUCGGccGCGAg -3' miRNA: 3'- gCUUCCUGGcc-CCUaGCAGCU--UGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 166011 | 0.66 | 0.979137 |
Target: 5'- cCGAcGGcuCCGGGGAcgCGUUcGGCGGCc -3' miRNA: 3'- -GCUuCCu-GGCCCCUa-GCAGcUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 90936 | 0.66 | 0.983141 |
Target: 5'- gGgcGcGACCGGGGcgugCGUgGGcGCGACg -3' miRNA: 3'- gCuuC-CUGGCCCCua--GCAgCU-UGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 4449 | 0.66 | 0.981219 |
Target: 5'- uGccGGGCgCGGGGGUCGgCGu-CGGCc -3' miRNA: 3'- gCuuCCUG-GCCCCUAGCaGCuuGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 223899 | 0.66 | 0.981219 |
Target: 5'- aGGAGGAgCGGGag-CGgcgCGGGCGAg -3' miRNA: 3'- gCUUCCUgGCCCcuaGCa--GCUUGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 201685 | 0.66 | 0.976889 |
Target: 5'- gCGAGGGcgGCCGcgucuggugcGGGAUCGgCG-GCGGCg -3' miRNA: 3'- -GCUUCC--UGGC----------CCCUAGCaGCuUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 226603 | 0.66 | 0.983141 |
Target: 5'- cCGggGGAggaGGGGAcggCGaCGcAGCGACg -3' miRNA: 3'- -GCuuCCUgg-CCCCUa--GCaGC-UUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 30414 | 0.66 | 0.983141 |
Target: 5'- gGAcgGGGACgCGGGcGUCGUC--GCGGCc -3' miRNA: 3'- gCU--UCCUG-GCCCcUAGCAGcuUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 79940 | 0.66 | 0.979137 |
Target: 5'- cCGAGGcGGCgCGGGGGUCcgccugccGUCGGaaGCGGu -3' miRNA: 3'- -GCUUC-CUG-GCCCCUAG--------CAGCU--UGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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