miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 36839 0.67 0.971866
Target:  5'- uGggGaACUGGGGGgacaCGUCGGGcCGAUa -3'
miRNA:   3'- gCuuCcUGGCCCCUa---GCAGCUU-GCUG- -5'
9117 5' -55 NC_002512.2 + 38663 0.67 0.970217
Target:  5'- cCGAGGaGGCCGGGGA-CGcccccggggaagacCGAGcCGACg -3'
miRNA:   3'- -GCUUC-CUGGCCCCUaGCa-------------GCUU-GCUG- -5'
9117 5' -55 NC_002512.2 + 39548 0.66 0.979137
Target:  5'- uGAAGGACgCGGGacggugccaaGggCGgcgaCGGGCGACa -3'
miRNA:   3'- gCUUCCUG-GCCC----------CuaGCa---GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 42308 0.72 0.823013
Target:  5'- aGAGGGAgCGGGGGggaucUCGacgCGcGCGACg -3'
miRNA:   3'- gCUUCCUgGCCCCU-----AGCa--GCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 43268 0.67 0.96908
Target:  5'- gCGAGcuGGucuCCuggaGGGGGUCGUCGAACa-- -3'
miRNA:   3'- -GCUU--CCu--GG----CCCCUAGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 44056 0.69 0.908248
Target:  5'- aGAAGaACUGGGGGaCGUUG-ACGGCg -3'
miRNA:   3'- gCUUCcUGGCCCCUaGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 45197 0.68 0.943957
Target:  5'- uCGAccGGGACCGGcGG--CG-CGGACGGCc -3'
miRNA:   3'- -GCU--UCCUGGCC-CCuaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 47735 0.66 0.976889
Target:  5'- aGGAGGGCuCGGaacaGAUCGUgGAGCuGCa -3'
miRNA:   3'- gCUUCCUG-GCCc---CUAGCAgCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 53866 0.69 0.92488
Target:  5'- aGggGGACCGuccguuccccaGGGAcCGaCGGACGAg -3'
miRNA:   3'- gCuuCCUGGC-----------CCCUaGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 54669 0.66 0.983141
Target:  5'- aGAuGGACCGGcGGAcgGUgGAcGCGGCg -3'
miRNA:   3'- gCUuCCUGGCC-CCUagCAgCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 55037 0.67 0.966102
Target:  5'- gGucGGGCCGccuaccgacGGGAgagaCGaUCGAGCGACa -3'
miRNA:   3'- gCuuCCUGGC---------CCCUa---GC-AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 57037 0.73 0.734072
Target:  5'- gCGGAGGccgcguccgacgACCGGGGggCGcCGGGCGAa -3'
miRNA:   3'- -GCUUCC------------UGGCCCCuaGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 63554 0.68 0.952181
Target:  5'- uCGAAGauGACCcuccggagGGGGAUCcuggccagGUUGGGCGACg -3'
miRNA:   3'- -GCUUC--CUGG--------CCCCUAG--------CAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 67989 0.66 0.974467
Target:  5'- aGGAGGGCCGGcgcgaGGAgaGg-GAGCGACg -3'
miRNA:   3'- gCUUCCUGGCC-----CCUagCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 70704 0.69 0.914012
Target:  5'- gCGggGGACgGGGGGaCGgggGGACGGg -3'
miRNA:   3'- -GCuuCCUGgCCCCUaGCag-CUUGCUg -5'
9117 5' -55 NC_002512.2 + 71007 0.74 0.705417
Target:  5'- aCGAAGGACgGGGGGcCGccgccggccggUCGAcgACGACg -3'
miRNA:   3'- -GCUUCCUGgCCCCUaGC-----------AGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 74649 0.67 0.966102
Target:  5'- cCGggGGAgaUCGGGGGagcUCGggGGACGGg -3'
miRNA:   3'- -GCuuCCU--GGCCCCU---AGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 74918 0.68 0.934861
Target:  5'- gCGGAGGcCCGGaggcGGAUCG-CGGACcGCg -3'
miRNA:   3'- -GCUUCCuGGCC----CCUAGCaGCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 75022 0.68 0.934861
Target:  5'- cCGAucgAGGGCCGGGGA-CGaggGGACGcACg -3'
miRNA:   3'- -GCU---UCCUGGCCCCUaGCag-CUUGC-UG- -5'
9117 5' -55 NC_002512.2 + 75054 0.76 0.59752
Target:  5'- aCGGAGGGCgGGGGAgac-CGGGCGGCg -3'
miRNA:   3'- -GCUUCCUGgCCCCUagcaGCUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.