miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 138037 0.74 0.724591
Target:  5'- uCGggGGcaugaGCCGGGacuGGUCGaCGGACGGCg -3'
miRNA:   3'- -GCuuCC-----UGGCCC---CUAGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 116894 0.74 0.686012
Target:  5'- gCGGcGGGGCCGGGGcgggcUCcUCGGACGGCg -3'
miRNA:   3'- -GCU-UCCUGGCCCCu----AGcAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 221268 0.73 0.752779
Target:  5'- uCGggGGACgCGGGGcgCGUgGAGgGGg -3'
miRNA:   3'- -GCuuCCUG-GCCCCuaGCAgCUUgCUg -5'
9117 5' -55 NC_002512.2 + 57037 0.73 0.734072
Target:  5'- gCGGAGGccgcguccgacgACCGGGGggCGcCGGGCGAa -3'
miRNA:   3'- -GCUUCC------------UGGCCCCuaGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 194836 0.73 0.743471
Target:  5'- uCGAcaGACCGGGGAUCGUguUGAACaACg -3'
miRNA:   3'- -GCUucCUGGCCCCUAGCA--GCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 130230 0.73 0.743471
Target:  5'- cCGAGcuGCCGGGGAUCGgcUCGGGCGcCg -3'
miRNA:   3'- -GCUUccUGGCCCCUAGC--AGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 191522 0.73 0.743471
Target:  5'- aCGAGGaGGCCGuGGGGUCGggCGAccCGGCg -3'
miRNA:   3'- -GCUUC-CUGGC-CCCUAGCa-GCUu-GCUG- -5'
9117 5' -55 NC_002512.2 + 199495 0.73 0.752779
Target:  5'- cCGucAGGGCCGcGaGGAucaggucgaggUCGUCGGGCGACa -3'
miRNA:   3'- -GCu-UCCUGGC-C-CCU-----------AGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 99980 0.73 0.771091
Target:  5'- cCGAGGaGACgGGagagcGGAUCGUCGGcgaggGCGACg -3'
miRNA:   3'- -GCUUC-CUGgCC-----CCUAGCAGCU-----UGCUG- -5'
9117 5' -55 NC_002512.2 + 217942 0.72 0.797676
Target:  5'- -uGGGGACCGGGG--CGggGAACGACu -3'
miRNA:   3'- gcUUCCUGGCCCCuaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 217588 0.72 0.788943
Target:  5'- cCGgcGGcGCCgccucGGGGGUCGUCG-GCGACu -3'
miRNA:   3'- -GCuuCC-UGG-----CCCCUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 42308 0.72 0.823013
Target:  5'- aGAGGGAgCGGGGGggaucUCGacgCGcGCGACg -3'
miRNA:   3'- gCUUCCUgGCCCCU-----AGCa--GCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 115729 0.72 0.788943
Target:  5'- aGGAGGACCGGgcccGGGUCGUCcucugcCGGCu -3'
miRNA:   3'- gCUUCCUGGCC----CCUAGCAGcuu---GCUG- -5'
9117 5' -55 NC_002512.2 + 142278 0.72 0.788943
Target:  5'- ---cGGGCCGGGGAcggCGUCGA-CGGg -3'
miRNA:   3'- gcuuCCUGGCCCCUa--GCAGCUuGCUg -5'
9117 5' -55 NC_002512.2 + 86874 0.72 0.823013
Target:  5'- uGAGGGcGCUGGGGAagaUgG-CGAACGACu -3'
miRNA:   3'- gCUUCC-UGGCCCCU---AgCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 226067 0.72 0.788943
Target:  5'- -aGGGGAUCGGGGA-CGUaggGGACGGCu -3'
miRNA:   3'- gcUUCCUGGCCCCUaGCAg--CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 142190 0.71 0.854511
Target:  5'- aGAAGGAuCCGGGGucgUGUCGGcGCGcCg -3'
miRNA:   3'- gCUUCCU-GGCCCCua-GCAGCU-UGCuG- -5'
9117 5' -55 NC_002512.2 + 217885 0.71 0.846902
Target:  5'- cCGA--GAUCGGcGGccgcGUCGUCGAGCGGCg -3'
miRNA:   3'- -GCUucCUGGCC-CC----UAGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 108441 0.71 0.839111
Target:  5'- -cGGGGGCCGGGGGgucccUCccCGGGCGGCg -3'
miRNA:   3'- gcUUCCUGGCCCCU-----AGcaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 127639 0.71 0.846902
Target:  5'- gCGAaaGGGAUCGGG--UCGcUCGGACGGCc -3'
miRNA:   3'- -GCU--UCCUGGCCCcuAGC-AGCUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.