miRNA display CGI


Results 21 - 40 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 212147 0.76 0.132715
Target:  5'- gUGCgucgGCGGGCACUggcggcgggacGGCUGGGCCGUccaGGCg -3'
miRNA:   3'- -ACG----UGCCCGUGG-----------UCGGCCCGGCG---CCG- -5'
9120 3' -66 NC_002512.2 + 198154 0.76 0.139134
Target:  5'- cGCGCGGGC-CgGGUCGGcGCCGgcCGGCg -3'
miRNA:   3'- aCGUGCCCGuGgUCGGCC-CGGC--GCCG- -5'
9120 3' -66 NC_002512.2 + 92528 0.76 0.139134
Target:  5'- cGCGCGGaucuacCCGGCCGcggcGGCCGCGGCg -3'
miRNA:   3'- aCGUGCCcgu---GGUCGGC----CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 90443 0.76 0.149297
Target:  5'- gGCAggaaGGGCGgCGGCCGGGCCaGCuGCg -3'
miRNA:   3'- aCGUg---CCCGUgGUCGGCCCGG-CGcCG- -5'
9120 3' -66 NC_002512.2 + 157153 0.76 0.152833
Target:  5'- gGgGCGGGCgGCgGGCCGGGCgGCgugGGCg -3'
miRNA:   3'- aCgUGCCCG-UGgUCGGCCCGgCG---CCG- -5'
9120 3' -66 NC_002512.2 + 117799 0.75 0.156444
Target:  5'- cGCGUGGGUccGCCAGgcgaCGGGCuCGCGGCg -3'
miRNA:   3'- aCGUGCCCG--UGGUCg---GCCCG-GCGCCG- -5'
9120 3' -66 NC_002512.2 + 186207 0.75 0.163518
Target:  5'- gGCuCGGGCGCCGaugacGCCGcGGCCGCcaccgagGGCg -3'
miRNA:   3'- aCGuGCCCGUGGU-----CGGC-CCGGCG-------CCG- -5'
9120 3' -66 NC_002512.2 + 99896 0.75 0.163898
Target:  5'- gGCACGcGGCGCC-GCCGGcGCUcccgGCGGUg -3'
miRNA:   3'- aCGUGC-CCGUGGuCGGCC-CGG----CGCCG- -5'
9120 3' -66 NC_002512.2 + 90121 0.75 0.163898
Target:  5'- -uCGCGGGCGCCcgguGCgcgaGGGCCGCGGa -3'
miRNA:   3'- acGUGCCCGUGGu---CGg---CCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 110506 0.75 0.163898
Target:  5'- aUGUuCGGGUugCGGCCGcGcGCCGCGaGCg -3'
miRNA:   3'- -ACGuGCCCGugGUCGGC-C-CGGCGC-CG- -5'
9120 3' -66 NC_002512.2 + 146722 0.75 0.167744
Target:  5'- gGCG-GGGCGgCGGCCGcGGCCGCcgGGCc -3'
miRNA:   3'- aCGUgCCCGUgGUCGGC-CCGGCG--CCG- -5'
9120 3' -66 NC_002512.2 + 113263 0.75 0.167744
Target:  5'- aGCGagggGGGCgGCCGGCgGGgcaGCCGCGGCg -3'
miRNA:   3'- aCGUg---CCCG-UGGUCGgCC---CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 180562 0.75 0.170879
Target:  5'- uUGCgGCGGGCuCCGGUggcucucuaucaGGGCCGUGGCg -3'
miRNA:   3'- -ACG-UGCCCGuGGUCGg-----------CCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 108509 0.75 0.171671
Target:  5'- gGC-CGGGCccggcgcccgACCGGCCGGGgacCCGaCGGCg -3'
miRNA:   3'- aCGuGCCCG----------UGGUCGGCCC---GGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 90627 0.75 0.175679
Target:  5'- cGCGcCGGGCGgCGcgacccggcGCCGcGGCCGCGGUc -3'
miRNA:   3'- aCGU-GCCCGUgGU---------CGGC-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 110169 0.75 0.175679
Target:  5'- cGUGCGGGCGCaCGGCCGgccGGCCGCuucucGCg -3'
miRNA:   3'- aCGUGCCCGUG-GUCGGC---CCGGCGc----CG- -5'
9120 3' -66 NC_002512.2 + 82026 0.75 0.179771
Target:  5'- cGCcCGGGUcggggucgcGCCGGCgGcGGUCGCGGCg -3'
miRNA:   3'- aCGuGCCCG---------UGGUCGgC-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 147481 0.74 0.183946
Target:  5'- cGCGCGGGCGCUgcGGaCGGGCgCGacCGGCg -3'
miRNA:   3'- aCGUGCCCGUGG--UCgGCCCG-GC--GCCG- -5'
9120 3' -66 NC_002512.2 + 115579 0.74 0.189936
Target:  5'- gGCGCuGGaGCACCugcGCCGGGUguacaagaacacggaCGCGGCg -3'
miRNA:   3'- aCGUG-CC-CGUGGu--CGGCCCG---------------GCGCCG- -5'
9120 3' -66 NC_002512.2 + 134692 0.74 0.196543
Target:  5'- --aGCGGGCGCUcGCCGGGCUGCccgacauccugggGGCc -3'
miRNA:   3'- acgUGCCCGUGGuCGGCCCGGCG-------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.