miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 107196 1.09 0.000601
Target:  5'- gUGCACGGGCACCAGCCGGGCCGCGGCc -3'
miRNA:   3'- -ACGUGCCCGUGGUCGGCCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 113145 0.85 0.032865
Target:  5'- cGCGCgGGGCGCCGGCCucGCCGCGGCc -3'
miRNA:   3'- aCGUG-CCCGUGGUCGGccCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 78544 0.84 0.039142
Target:  5'- gGCAacauGGCGCCGGCCGGGCCGCgagGGCg -3'
miRNA:   3'- aCGUgc--CCGUGGUCGGCCCGGCG---CCG- -5'
9120 3' -66 NC_002512.2 + 188641 0.8 0.070871
Target:  5'- cGCAaGGGCGCCGGCgGcGGCgGCGGCc -3'
miRNA:   3'- aCGUgCCCGUGGUCGgC-CCGgCGCCG- -5'
9120 3' -66 NC_002512.2 + 6346 0.8 0.072628
Target:  5'- gGCGCGGG-GCCGG-CGGGCCGCGGg -3'
miRNA:   3'- aCGUGCCCgUGGUCgGCCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 5229 0.8 0.077964
Target:  5'- gGCGggaaagucgaacuCGGGCGCguaGGCCGaGGCCGCGGCg -3'
miRNA:   3'- aCGU-------------GCCCGUGg--UCGGC-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 2823 0.8 0.07989
Target:  5'- gGCGCGGGCGCgGGcCCGGacgacggcgggcaGCUGCGGCa -3'
miRNA:   3'- aCGUGCCCGUGgUC-GGCC-------------CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 79605 0.8 0.080085
Target:  5'- -uCGCGGGCGgCAgcGCCGGGUCGCGGUa -3'
miRNA:   3'- acGUGCCCGUgGU--CGGCCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 225789 0.79 0.086152
Target:  5'- gGCu---GCGCCGGCCGGGCCGCGGg -3'
miRNA:   3'- aCGugccCGUGGUCGGCCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 43070 0.79 0.090438
Target:  5'- cGC-CGaGGCACCGGucCCGGGgCGCGGCg -3'
miRNA:   3'- aCGuGC-CCGUGGUC--GGCCCgGCGCCG- -5'
9120 3' -66 NC_002512.2 + 218201 0.78 0.099622
Target:  5'- cGCcccuCGGGCcCCcGCCucGGGCCGCGGCg -3'
miRNA:   3'- aCGu---GCCCGuGGuCGG--CCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 87854 0.78 0.099622
Target:  5'- cGCgGCGGGuCGCCGGCCcccGGCCGCGGa -3'
miRNA:   3'- aCG-UGCCC-GUGGUCGGc--CCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 222419 0.78 0.104539
Target:  5'- gGCGgGGGcCGgCAGCCGcGCCGCGGCu -3'
miRNA:   3'- aCGUgCCC-GUgGUCGGCcCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 14763 0.78 0.104539
Target:  5'- cGCGCGGaCcCCGGCCGuucuggcggucGGCCGCGGCg -3'
miRNA:   3'- aCGUGCCcGuGGUCGGC-----------CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 136224 0.78 0.104539
Target:  5'- gUGCGCGGGggucaGCguGCUGGGCuCGUGGCa -3'
miRNA:   3'- -ACGUGCCCg----UGguCGGCCCG-GCGCCG- -5'
9120 3' -66 NC_002512.2 + 45411 0.78 0.107082
Target:  5'- cGUGCGGGCGCUcgacGGCgGcgccGGCCGCGGCg -3'
miRNA:   3'- aCGUGCCCGUGG----UCGgC----CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 99726 0.77 0.123597
Target:  5'- cGuCGCGGGCcgGCCcgccGCCGGGCCccGCGGCc -3'
miRNA:   3'- aC-GUGCCCG--UGGu---CGGCCCGG--CGCCG- -5'
9120 3' -66 NC_002512.2 + 131351 0.77 0.126569
Target:  5'- cGC-CGGGCGaggucCCAGCCGGcGCgGUGGCu -3'
miRNA:   3'- aCGuGCCCGU-----GGUCGGCC-CGgCGCCG- -5'
9120 3' -66 NC_002512.2 + 227082 0.77 0.129608
Target:  5'- cGCGcCGGGUcccgccggccGCCGGCCGGGUCG-GGCu -3'
miRNA:   3'- aCGU-GCCCG----------UGGUCGGCCCGGCgCCG- -5'
9120 3' -66 NC_002512.2 + 31662 0.76 0.132715
Target:  5'- gGCGCGGGCG-CGGCCGuGGUgGCGGa -3'
miRNA:   3'- aCGUGCCCGUgGUCGGC-CCGgCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.