miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 112773 0.66 0.542674
Target:  5'- cGCG-GGGCcccguGCCGcuguGCCGGGUCcaggGCGGCc -3'
miRNA:   3'- aCGUgCCCG-----UGGU----CGGCCCGG----CGCCG- -5'
9120 3' -66 NC_002512.2 + 26636 0.66 0.537224
Target:  5'- cGCuacCGGGUgauccACCAGCgcacgaggucgggggCGGGCUcgaaGCGGCa -3'
miRNA:   3'- aCGu--GCCCG-----UGGUCG---------------GCCCGG----CGCCG- -5'
9120 3' -66 NC_002512.2 + 225341 0.66 0.551797
Target:  5'- gGaCGCGGGCGgaauCCGGguauugguguCCGGGUCcCGGCa -3'
miRNA:   3'- aC-GUGCCCGU----GGUC----------GGCCCGGcGCCG- -5'
9120 3' -66 NC_002512.2 + 10265 0.66 0.532697
Target:  5'- --aGCGGGaCACCccgaugcccgagaAGCCGGGCagcgaGuCGGCc -3'
miRNA:   3'- acgUGCCC-GUGG-------------UCGGCCCGg----C-GCCG- -5'
9120 3' -66 NC_002512.2 + 96284 0.66 0.541764
Target:  5'- gGCGgGGGgGCU-GCCgcGGGCCGCcgccgcgGGCg -3'
miRNA:   3'- aCGUgCCCgUGGuCGG--CCCGGCG-------CCG- -5'
9120 3' -66 NC_002512.2 + 4576 0.66 0.533601
Target:  5'- cGuCugGGGCGgCGGaggaggCGGcGCCGCGGg -3'
miRNA:   3'- aC-GugCCCGUgGUCg-----GCC-CGGCGCCg -5'
9120 3' -66 NC_002512.2 + 84510 0.66 0.542674
Target:  5'- cGCGuCGGGCucccagucguaGCCcucguAGCCGGcGUCggGCGGCg -3'
miRNA:   3'- aCGU-GCCCG-----------UGG-----UCGGCC-CGG--CGCCG- -5'
9120 3' -66 NC_002512.2 + 94718 0.66 0.53089
Target:  5'- gUGCGCgGGGCgcaggcguucgcugGCCAGCaucaccaGGGCgGCccGGCc -3'
miRNA:   3'- -ACGUG-CCCG--------------UGGUCGg------CCCGgCG--CCG- -5'
9120 3' -66 NC_002512.2 + 84164 0.66 0.551797
Target:  5'- cGCGCGGGaggucCCGGUccagguucggCGGGaCCagGCGGCg -3'
miRNA:   3'- aCGUGCCCgu---GGUCG----------GCCC-GG--CGCCG- -5'
9120 3' -66 NC_002512.2 + 130247 0.66 0.555459
Target:  5'- gGCuCGGGCGCCgGGCCcuccgaGGGCgacgaccgcgacgagCGCGGg -3'
miRNA:   3'- aCGuGCCCGUGG-UCGG------CCCG---------------GCGCCg -5'
9120 3' -66 NC_002512.2 + 74233 0.66 0.542674
Target:  5'- cGCG-GGGCgaaCGGCCGGacgccgaagcGCCGcCGGCu -3'
miRNA:   3'- aCGUgCCCGug-GUCGGCC----------CGGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 10695 0.66 0.533601
Target:  5'- gUGCAgCGGGUACaggaAGCgGuaGCCGaCGGCg -3'
miRNA:   3'- -ACGU-GCCCGUGg---UCGgCc-CGGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 123283 0.66 0.551797
Target:  5'- gGaCAUGGaGCGCCGGCUGG-CC-CGGUu -3'
miRNA:   3'- aC-GUGCC-CGUGGUCGGCCcGGcGCCG- -5'
9120 3' -66 NC_002512.2 + 86121 0.66 0.542674
Target:  5'- gGCGCGGaggaggucgcGgACCuggaAGCCGacGCCGCGGCc -3'
miRNA:   3'- aCGUGCC----------CgUGG----UCGGCc-CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 47449 0.66 0.551797
Target:  5'- cGCAC-GGCGgaGGCCGaGGCCGaguuccgcaaGGCg -3'
miRNA:   3'- aCGUGcCCGUggUCGGC-CCGGCg---------CCG- -5'
9120 3' -66 NC_002512.2 + 7430 0.66 0.533601
Target:  5'- aGgGCcGGCGCgAGgUuGGCCGCGGCc -3'
miRNA:   3'- aCgUGcCCGUGgUCgGcCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 127447 0.66 0.542674
Target:  5'- cGCcauGCGGGUccaGCUggaGGUCGGGCagaaGCGGUu -3'
miRNA:   3'- aCG---UGCCCG---UGG---UCGGCCCGg---CGCCG- -5'
9120 3' -66 NC_002512.2 + 155311 0.66 0.533601
Target:  5'- gGCcuCGaGCACCAGagcgcCCaGGUCGCGGCg -3'
miRNA:   3'- aCGu-GCcCGUGGUC-----GGcCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 94057 0.66 0.533601
Target:  5'- gGCgacgACGGGCGCggCGGgaaCGGGaCCGuCGGCg -3'
miRNA:   3'- aCG----UGCCCGUG--GUCg--GCCC-GGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 38654 0.66 0.532697
Target:  5'- -cCGCGGGUACCgaggaGGCCGGGgacgcccCCGgGGa -3'
miRNA:   3'- acGUGCCCGUGG-----UCGGCCC-------GGCgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.