miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 227044 0.74 0.20613
Target:  5'- aGCgaggaACGGGCGgaCGGCCGGaGCCGUGGg -3'
miRNA:   3'- aCG-----UGCCCGUg-GUCGGCC-CGGCGCCg -5'
9120 3' -66 NC_002512.2 + 110169 0.75 0.175679
Target:  5'- cGUGCGGGCGCaCGGCCGgccGGCCGCuucucGCg -3'
miRNA:   3'- aCGUGCCCGUG-GUCGGC---CCGGCGc----CG- -5'
9120 3' -66 NC_002512.2 + 82026 0.75 0.179771
Target:  5'- cGCcCGGGUcggggucgcGCCGGCgGcGGUCGCGGCg -3'
miRNA:   3'- aCGuGCCCG---------UGGUCGgC-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 147481 0.74 0.183946
Target:  5'- cGCGCGGGCGCUgcGGaCGGGCgCGacCGGCg -3'
miRNA:   3'- aCGUGCCCGUGG--UCgGCCCG-GC--GCCG- -5'
9120 3' -66 NC_002512.2 + 134692 0.74 0.196543
Target:  5'- --aGCGGGCGCUcGCCGGGCUGCccgacauccugggGGCc -3'
miRNA:   3'- acgUGCCCGUGGuCGGCCCGGCG-------------CCG- -5'
9120 3' -66 NC_002512.2 + 80721 0.74 0.196991
Target:  5'- cGCGCGGGCccgcgggcggcACCGGCC---CCGCGGCg -3'
miRNA:   3'- aCGUGCCCG-----------UGGUCGGcccGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 32538 0.74 0.200149
Target:  5'- cGUGCGGGCAgugggggaucuucuCCAGCCgccgGGcGCCGCGGg -3'
miRNA:   3'- aCGUGCCCGU--------------GGUCGG----CC-CGGCGCCg -5'
9120 3' -66 NC_002512.2 + 101962 0.74 0.201516
Target:  5'- gGCccGCGGGCccGCCGG-CGGGCuCGUGGCc -3'
miRNA:   3'- aCG--UGCCCG--UGGUCgGCCCG-GCGCCG- -5'
9120 3' -66 NC_002512.2 + 7228 0.74 0.201516
Target:  5'- gGCGCcccucGGC-CCGGCCGGccGUCGCGGCg -3'
miRNA:   3'- aCGUGc----CCGuGGUCGGCC--CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 110506 0.75 0.163898
Target:  5'- aUGUuCGGGUugCGGCCGcGcGCCGCGaGCg -3'
miRNA:   3'- -ACGuGCCCGugGUCGGC-C-CGGCGC-CG- -5'
9120 3' -66 NC_002512.2 + 90121 0.75 0.163898
Target:  5'- -uCGCGGGCGCCcgguGCgcgaGGGCCGCGGa -3'
miRNA:   3'- acGUGCCCGUGGu---CGg---CCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 31662 0.76 0.132715
Target:  5'- gGCGCGGGCG-CGGCCGuGGUgGCGGa -3'
miRNA:   3'- aCGUGCCCGUgGUCGGC-CCGgCGCCg -5'
9120 3' -66 NC_002512.2 + 6346 0.8 0.072628
Target:  5'- gGCGCGGG-GCCGG-CGGGCCGCGGg -3'
miRNA:   3'- aCGUGCCCgUGGUCgGCCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 5229 0.8 0.077964
Target:  5'- gGCGggaaagucgaacuCGGGCGCguaGGCCGaGGCCGCGGCg -3'
miRNA:   3'- aCGU-------------GCCCGUGg--UCGGC-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 2823 0.8 0.07989
Target:  5'- gGCGCGGGCGCgGGcCCGGacgacggcgggcaGCUGCGGCa -3'
miRNA:   3'- aCGUGCCCGUGgUC-GGCC-------------CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 79605 0.8 0.080085
Target:  5'- -uCGCGGGCGgCAgcGCCGGGUCGCGGUa -3'
miRNA:   3'- acGUGCCCGUgGU--CGGCCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 43070 0.79 0.090438
Target:  5'- cGC-CGaGGCACCGGucCCGGGgCGCGGCg -3'
miRNA:   3'- aCGuGC-CCGUGGUC--GGCCCgGCGCCG- -5'
9120 3' -66 NC_002512.2 + 136224 0.78 0.104539
Target:  5'- gUGCGCGGGggucaGCguGCUGGGCuCGUGGCa -3'
miRNA:   3'- -ACGUGCCCg----UGguCGGCCCG-GCGCCG- -5'
9120 3' -66 NC_002512.2 + 14763 0.78 0.104539
Target:  5'- cGCGCGGaCcCCGGCCGuucuggcggucGGCCGCGGCg -3'
miRNA:   3'- aCGUGCCcGuGGUCGGC-----------CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 45411 0.78 0.107082
Target:  5'- cGUGCGGGCGCUcgacGGCgGcgccGGCCGCGGCg -3'
miRNA:   3'- aCGUGCCCGUGG----UCGgC----CCGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.