miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 139 0.7 0.325479
Target:  5'- cGC-CGGGgaGCCGGgCGGGgCGcCGGCg -3'
miRNA:   3'- aCGuGCCCg-UGGUCgGCCCgGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 2074 0.71 0.278946
Target:  5'- aGCGCGGaGUccacGCCGGgCGggagcgggcgguacGGCCGCGGCu -3'
miRNA:   3'- aCGUGCC-CG----UGGUCgGC--------------CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 2211 0.66 0.578496
Target:  5'- uUGCGCaGcGuCGCCAGCCGcGCUucgugucucgccuGCGGCa -3'
miRNA:   3'- -ACGUGcC-C-GUGGUCGGCcCGG-------------CGCCG- -5'
9120 3' -66 NC_002512.2 + 2823 0.8 0.07989
Target:  5'- gGCGCGGGCGCgGGcCCGGacgacggcgggcaGCUGCGGCa -3'
miRNA:   3'- aCGUGCCCGUGgUC-GGCC-------------CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 3067 0.68 0.438199
Target:  5'- cGgACGcGGCGgCGGCgGcGGCCacgGCGGCg -3'
miRNA:   3'- aCgUGC-CCGUgGUCGgC-CCGG---CGCCG- -5'
9120 3' -66 NC_002512.2 + 3378 0.71 0.305686
Target:  5'- gGCA-GGGcCGCCAGCaGGacCCGCGGCg -3'
miRNA:   3'- aCGUgCCC-GUGGUCGgCCc-GGCGCCG- -5'
9120 3' -66 NC_002512.2 + 3413 0.67 0.483913
Target:  5'- cGCcCGGGCcCCGGCCuccucccgccucgcgGGGCUGguCGGUg -3'
miRNA:   3'- aCGuGCCCGuGGUCGG---------------CCCGGC--GCCG- -5'
9120 3' -66 NC_002512.2 + 4576 0.66 0.533601
Target:  5'- cGuCugGGGCGgCGGaggaggCGGcGCCGCGGg -3'
miRNA:   3'- aC-GugCCCGUgGUCg-----GCC-CGGCGCCg -5'
9120 3' -66 NC_002512.2 + 4873 0.73 0.220525
Target:  5'- cGCGUGcGGCGCCGGCUGGaGgaGCGGCg -3'
miRNA:   3'- aCGUGC-CCGUGGUCGGCC-CggCGCCG- -5'
9120 3' -66 NC_002512.2 + 5229 0.8 0.077964
Target:  5'- gGCGggaaagucgaacuCGGGCGCguaGGCCGaGGCCGCGGCg -3'
miRNA:   3'- aCGU-------------GCCCGUGg--UCGGC-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 6346 0.8 0.072628
Target:  5'- gGCGCGGG-GCCGG-CGGGCCGCGGg -3'
miRNA:   3'- aCGUGCCCgUGGUCgGCCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 6438 0.66 0.588701
Target:  5'- cGUcugGCGGGCGCCgAGaCagGGGUCGgcCGGCa -3'
miRNA:   3'- aCG---UGCCCGUGG-UC-Gg-CCCGGC--GCCG- -5'
9120 3' -66 NC_002512.2 + 6933 0.66 0.578496
Target:  5'- gUGCACGacgcagcGGUagagGCCGGCCaGGUCGuUGGCc -3'
miRNA:   3'- -ACGUGC-------CCG----UGGUCGGcCCGGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 7020 0.66 0.57387
Target:  5'- cGCA-GGGC-CUuGCCGGGCuCgucguucgggacgaaGCGGCa -3'
miRNA:   3'- aCGUgCCCGuGGuCGGCCCG-G---------------CGCCG- -5'
9120 3' -66 NC_002512.2 + 7228 0.74 0.201516
Target:  5'- gGCGCcccucGGC-CCGGCCGGccGUCGCGGCg -3'
miRNA:   3'- aCGUGc----CCGuGGUCGGCC--CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 7281 0.73 0.209415
Target:  5'- gGCGCGaGGCcCCgggggccggacaGGCCuccuccgcgacggcGGGCCGCGGCg -3'
miRNA:   3'- aCGUGC-CCGuGG------------UCGG--------------CCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 7338 0.68 0.421904
Target:  5'- cGguCGGGuCGCCguagccccGGCCcaccgcgacgGcGGCCGCGGCg -3'
miRNA:   3'- aCguGCCC-GUGG--------UCGG----------C-CCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 7430 0.66 0.533601
Target:  5'- aGgGCcGGCGCgAGgUuGGCCGCGGCc -3'
miRNA:   3'- aCgUGcCCGUGgUCgGcCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 7470 0.72 0.257457
Target:  5'- gGCGCGGcUGCCGGCCcccgccgaaGCCGCGGCg -3'
miRNA:   3'- aCGUGCCcGUGGUCGGcc-------CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 7758 0.66 0.579422
Target:  5'- aGC-CgGGGCGgUAGUC-GGCCGCGGa -3'
miRNA:   3'- aCGuG-CCCGUgGUCGGcCCGGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.