miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 5' -55.9 NC_002512.2 + 220038 0.66 0.966309
Target:  5'- cGGGGUcCGGgCGAUCUCGACauGGCUcCg -3'
miRNA:   3'- -UCCCAcGUCaGCUAGAGCUG--CUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 219061 0.7 0.804889
Target:  5'- cGGGGcuccccGCGGgcuUCGAgCUCGACGugCUCa -3'
miRNA:   3'- -UCCCa-----CGUC---AGCUaGAGCUGCugGAG- -5'
9121 5' -55.9 NC_002512.2 + 209344 0.72 0.712668
Target:  5'- uGGaGGUGUGGUaCGAggUCGGCGACCUg -3'
miRNA:   3'- -UC-CCACGUCA-GCUagAGCUGCUGGAg -5'
9121 5' -55.9 NC_002512.2 + 106845 1.08 0.005148
Target:  5'- cAGGGUGCAGUCGAUCUCGACGACCUCc -3'
miRNA:   3'- -UCCCACGUCAGCUAGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 224356 0.66 0.948279
Target:  5'- cGGGGUcGCGGgcgggagaccUCGGUC-CGG-GACCUCg -3'
miRNA:   3'- -UCCCA-CGUC----------AGCUAGaGCUgCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 227712 0.67 0.939555
Target:  5'- gGGGGcGCGGUaCGGUCccCGACu-CCUCg -3'
miRNA:   3'- -UCCCaCGUCA-GCUAGa-GCUGcuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 191598 0.67 0.934858
Target:  5'- -cGGUcgcGCGGUCGAgucCUCGGCGuCUUCu -3'
miRNA:   3'- ucCCA---CGUCAGCUa--GAGCUGCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 103575 0.67 0.933892
Target:  5'- uGGGGagacgacgccucGCAGgccacgagggCGGUgUCGACGGCCUCc -3'
miRNA:   3'- -UCCCa-----------CGUCa---------GCUAgAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 156475 0.67 0.919416
Target:  5'- cGGGG-GCGG-CGggCUCGGCGGgCUg -3'
miRNA:   3'- -UCCCaCGUCaGCuaGAGCUGCUgGAg -5'
9121 5' -55.9 NC_002512.2 + 153070 0.7 0.838102
Target:  5'- cGGGUcgGCGGUCGAgg-CGGCGAUCg- -3'
miRNA:   3'- uCCCA--CGUCAGCUagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 76122 0.69 0.882509
Target:  5'- cGGGGUGguGUCGAUgaCGucguccgauuCGACCa- -3'
miRNA:   3'- -UCCCACguCAGCUAgaGCu---------GCUGGag -5'
9121 5' -55.9 NC_002512.2 + 201864 0.67 0.919416
Target:  5'- uGGGGccUGCGGUcCGAggacggCGGCGGCUUCu -3'
miRNA:   3'- -UCCC--ACGUCA-GCUaga---GCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 155026 0.66 0.966309
Target:  5'- cGGGUGCGGUUccggagcgGAUCgCGACGGggagggUCUCc -3'
miRNA:   3'- uCCCACGUCAG--------CUAGaGCUGCU------GGAG- -5'
9121 5' -55.9 NC_002512.2 + 105844 0.69 0.868494
Target:  5'- gAGGGUGCcGUCGAUCagGGCGuACa-- -3'
miRNA:   3'- -UCCCACGuCAGCUAGagCUGC-UGgag -5'
9121 5' -55.9 NC_002512.2 + 146724 0.66 0.959728
Target:  5'- cGGGGcgGCGGccgcggccgcCGggCcCGACGACCUCg -3'
miRNA:   3'- -UCCCa-CGUCa---------GCuaGaGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 116469 0.67 0.929936
Target:  5'- cGGG-GCGGU-GAUCcCGGCGGCC-Ca -3'
miRNA:   3'- uCCCaCGUCAgCUAGaGCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 201781 0.69 0.845981
Target:  5'- gAGGGUgagagcGCGGaCGGgg-CGGCGACCUCu -3'
miRNA:   3'- -UCCCA------CGUCaGCUagaGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 150519 0.72 0.741398
Target:  5'- cGGGGUGCAGUUccacgCGGCGGCCg- -3'
miRNA:   3'- -UCCCACGUCAGcuagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 150682 0.66 0.957592
Target:  5'- cGGGcgcgGCGGUCGccccgacggaccguuGgcUCUCGGCGGCCg- -3'
miRNA:   3'- uCCCa---CGUCAGC---------------U--AGAGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 221453 0.67 0.939555
Target:  5'- cGGGGcGCGGUCG-UC-CGAcCGGCCg- -3'
miRNA:   3'- -UCCCaCGUCAGCuAGaGCU-GCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.