miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 5' -55.9 NC_002512.2 + 116469 0.67 0.929936
Target:  5'- cGGG-GCGGU-GAUCcCGGCGGCC-Ca -3'
miRNA:   3'- uCCCaCGUCAgCUAGaGCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 153746 0.67 0.919416
Target:  5'- gGGGGgGUGGUCGaAUCg-GACGACgUCa -3'
miRNA:   3'- -UCCCaCGUCAGC-UAGagCUGCUGgAG- -5'
9121 5' -55.9 NC_002512.2 + 201864 0.67 0.919416
Target:  5'- uGGGGccUGCGGUcCGAggacggCGGCGGCUUCu -3'
miRNA:   3'- -UCCC--ACGUCA-GCUaga---GCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 156475 0.67 0.919416
Target:  5'- cGGGG-GCGG-CGggCUCGGCGGgCUg -3'
miRNA:   3'- -UCCCaCGUCaGCuaGAGCUGCUgGAg -5'
9121 5' -55.9 NC_002512.2 + 198042 0.68 0.913817
Target:  5'- gAGGGgacGCGGUCGucacagggacGUCUCGcGCGuccCCUCg -3'
miRNA:   3'- -UCCCa--CGUCAGC----------UAGAGC-UGCu--GGAG- -5'
9121 5' -55.9 NC_002512.2 + 28594 0.68 0.895686
Target:  5'- gAGcGGUGCGcGUC-AUCUCGGUGGCCUUc -3'
miRNA:   3'- -UC-CCACGU-CAGcUAGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 76122 0.69 0.882509
Target:  5'- cGGGGUGguGUCGAUgaCGucguccgauuCGACCa- -3'
miRNA:   3'- -UCCCACguCAGCUAgaGCu---------GCUGGag -5'
9121 5' -55.9 NC_002512.2 + 58248 0.69 0.878391
Target:  5'- cAGGGUccgauacucguccucGCuGUCGggCccgaaggCGACGACCUCg -3'
miRNA:   3'- -UCCCA---------------CGuCAGCuaGa------GCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 105844 0.69 0.868494
Target:  5'- gAGGGUGCcGUCGAUCagGGCGuACa-- -3'
miRNA:   3'- -UCCCACGuCAGCUAGagCUGC-UGgag -5'
9121 5' -55.9 NC_002512.2 + 46665 0.69 0.861183
Target:  5'- aGGGGUccucGgGGUCGAUCcCGuCGAUCUCc -3'
miRNA:   3'- -UCCCA----CgUCAGCUAGaGCuGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 57123 0.69 0.860441
Target:  5'- gGGGGUGC-GcCGAcaguaccUCUCGACGAagaCCUUg -3'
miRNA:   3'- -UCCCACGuCaGCU-------AGAGCUGCU---GGAG- -5'
9121 5' -55.9 NC_002512.2 + 201781 0.69 0.845981
Target:  5'- gAGGGUgagagcGCGGaCGGgg-CGGCGACCUCu -3'
miRNA:   3'- -UCCCA------CGUCaGCUagaGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 32011 0.7 0.841275
Target:  5'- cGGGUcccgucacuugccccGCAGUCGGUUgaaGAgGGCCUCc -3'
miRNA:   3'- uCCCA---------------CGUCAGCUAGag-CUgCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 153070 0.7 0.838102
Target:  5'- cGGGUcgGCGGUCGAgg-CGGCGAUCg- -3'
miRNA:   3'- uCCCA--CGUCAGCUagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 106519 0.7 0.830047
Target:  5'- cGGGUGCAGUCuGAUCaucagcUCGAacgcguaguCGuCCUCg -3'
miRNA:   3'- uCCCACGUCAG-CUAG------AGCU---------GCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 219061 0.7 0.804889
Target:  5'- cGGGGcuccccGCGGgcuUCGAgCUCGACGugCUCa -3'
miRNA:   3'- -UCCCa-----CGUC---AGCUaGAGCUGCugGAG- -5'
9121 5' -55.9 NC_002512.2 + 150519 0.72 0.741398
Target:  5'- cGGGGUGCAGUUccacgCGGCGGCCg- -3'
miRNA:   3'- -UCCCACGUCAGcuagaGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 209344 0.72 0.712668
Target:  5'- uGGaGGUGUGGUaCGAggUCGGCGACCUg -3'
miRNA:   3'- -UC-CCACGUCA-GCUagAGCUGCUGGAg -5'
9121 5' -55.9 NC_002512.2 + 7209 0.72 0.702951
Target:  5'- cGGGcGCAGUCGAaCUCGAgGcgccCCUCg -3'
miRNA:   3'- uCCCaCGUCAGCUaGAGCUgCu---GGAG- -5'
9121 5' -55.9 NC_002512.2 + 107084 0.72 0.693178
Target:  5'- cGGGG-GCGGUCgGGUCggUCGGCGGCC-Cg -3'
miRNA:   3'- -UCCCaCGUCAG-CUAG--AGCUGCUGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.