miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 3' -54.4 NC_002512.2 + 85556 0.72 0.768291
Target:  5'- gGGGCucgaGGAGGCGcgGGAGCgggagCGGCCGGg -3'
miRNA:   3'- gUCUG----CUUCUGCa-UCUCGa----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 71004 0.72 0.777501
Target:  5'- gGGACGAAgGACGgGGGGCcgccgcCGGCCGGu -3'
miRNA:   3'- gUCUGCUU-CUGCaUCUCGa-----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 21243 0.72 0.777501
Target:  5'- gAGACGggGGCGgagAGGGCUgGaGCgGGa -3'
miRNA:   3'- gUCUGCuuCUGCa--UCUCGAgC-CGgUC- -5'
9126 3' -54.4 NC_002512.2 + 146709 0.72 0.777501
Target:  5'- -cGACGGAGACGacggcGGGGCggCGGCCGc -3'
miRNA:   3'- guCUGCUUCUGCa----UCUCGa-GCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 80846 0.72 0.786585
Target:  5'- gUAGGCGAgccucgGGACGcGGGGCUCGGUguCGGg -3'
miRNA:   3'- -GUCUGCU------UCUGCaUCUCGAGCCG--GUC- -5'
9126 3' -54.4 NC_002512.2 + 226774 0.72 0.786585
Target:  5'- aGGGCGAGGACGUcucGGGCgacgccguggucUCGGCCGc -3'
miRNA:   3'- gUCUGCUUCUGCAu--CUCG------------AGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 125145 0.72 0.786585
Target:  5'- -cGACGAGGACGgcgacgcggAGAGCUucgaggacuucgUGGCCGGc -3'
miRNA:   3'- guCUGCUUCUGCa--------UCUCGA------------GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 95630 0.72 0.786585
Target:  5'- -cGACGAAGGCcagGGggcGGCUCGGCCGc -3'
miRNA:   3'- guCUGCUUCUGca-UC---UCGAGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 19349 0.72 0.795535
Target:  5'- cCAGACGAugccGGAcCGUcgGGGGCUCGGCg-- -3'
miRNA:   3'- -GUCUGCU----UCU-GCA--UCUCGAGCCGguc -5'
9126 3' -54.4 NC_002512.2 + 10367 0.72 0.804342
Target:  5'- -cGACGAAGACG-GGGGUgccgaacgcCGGCCAGc -3'
miRNA:   3'- guCUGCUUCUGCaUCUCGa--------GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 16471 0.72 0.804342
Target:  5'- uCGGGCGGAGACGacAGAGCguaUGGCgCAGc -3'
miRNA:   3'- -GUCUGCUUCUGCa-UCUCGa--GCCG-GUC- -5'
9126 3' -54.4 NC_002512.2 + 133855 0.72 0.816418
Target:  5'- aGGAcacCGAGGACGUccuggggcggcucgaGGAgcgGCUCGGCCGGc -3'
miRNA:   3'- gUCU---GCUUCUGCA---------------UCU---CGAGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 105504 0.71 0.829828
Target:  5'- uCAGG-GAGGACGgGGGGCUCuGGCUGGa -3'
miRNA:   3'- -GUCUgCUUCUGCaUCUCGAG-CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 129770 0.71 0.837985
Target:  5'- -cGACGguGACGgAGAGCUCgucccgGGCCGGc -3'
miRNA:   3'- guCUGCuuCUGCaUCUCGAG------CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 200277 0.71 0.843588
Target:  5'- gGGACGAGGACGacgagccgucggacUGGGGCUCGuCCGc -3'
miRNA:   3'- gUCUGCUUCUGC--------------AUCUCGAGCcGGUc -5'
9126 3' -54.4 NC_002512.2 + 11564 0.71 0.845961
Target:  5'- aGGACGAGGGCuacggGGAGCacgagCGGCCGc -3'
miRNA:   3'- gUCUGCUUCUGca---UCUCGa----GCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 43489 0.71 0.845961
Target:  5'- aAGcCGAGGACGcGGAGCUgcagCGGUCGGu -3'
miRNA:   3'- gUCuGCUUCUGCaUCUCGA----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 213667 0.71 0.85375
Target:  5'- -uGACGGAGGCGgaggGGAGCcCGGCg-- -3'
miRNA:   3'- guCUGCUUCUGCa---UCUCGaGCCGguc -5'
9126 3' -54.4 NC_002512.2 + 81930 0.71 0.85375
Target:  5'- gGGACGAcGACGgcgAGGGCggaggGGCCGGc -3'
miRNA:   3'- gUCUGCUuCUGCa--UCUCGag---CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 130168 0.71 0.856812
Target:  5'- aGGACGAagugcaGGGCGUAGAagacgagggcccgucGCaugaUCGGCCAGu -3'
miRNA:   3'- gUCUGCU------UCUGCAUCU---------------CG----AGCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.