miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 3' -54.4 NC_002512.2 + 102983 1.09 0.005962
Target:  5'- cCAGACGAAGACGUAGAGCUCGGCCAGg -3'
miRNA:   3'- -GUCUGCUUCUGCAUCUCGAGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 93747 0.79 0.438307
Target:  5'- gGGACGggGACGgAGGGCUCGGagGGa -3'
miRNA:   3'- gUCUGCuuCUGCaUCUCGAGCCggUC- -5'
9126 3' -54.4 NC_002512.2 + 156469 0.76 0.560969
Target:  5'- gGGAcuCGggGGCGgcGGGCUCGGCgGGc -3'
miRNA:   3'- gUCU--GCuuCUGCauCUCGAGCCGgUC- -5'
9126 3' -54.4 NC_002512.2 + 176488 0.76 0.580833
Target:  5'- gGGACGggGACGUGGGGUcccucguccUCGGUCu- -3'
miRNA:   3'- gUCUGCuuCUGCAUCUCG---------AGCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 131188 0.76 0.580833
Target:  5'- gCAGugGAAGagcGCGUAGucguGCgCGGCCAGg -3'
miRNA:   3'- -GUCugCUUC---UGCAUCu---CGaGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 196406 0.75 0.630998
Target:  5'- uGGcGCGggGACGcggGGGGCggCGGCCGGg -3'
miRNA:   3'- gUC-UGCuuCUGCa--UCUCGa-GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 90561 0.75 0.65112
Target:  5'- aGGACGAGGGCG-AGGGCgaCGGCCc- -3'
miRNA:   3'- gUCUGCUUCUGCaUCUCGa-GCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 226069 0.75 0.65112
Target:  5'- gGGAuCGggGACGUAGGGgaCGGCUg- -3'
miRNA:   3'- gUCU-GCuuCUGCAUCUCgaGCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 148505 0.75 0.661162
Target:  5'- gGGACGggGACGaGGAGg-CGGCCGc -3'
miRNA:   3'- gUCUGCuuCUGCaUCUCgaGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 109034 0.74 0.709892
Target:  5'- gGGACGAGGACcgggGGGGCUCGGgggacgaCCGGa -3'
miRNA:   3'- gUCUGCUUCUGca--UCUCGAGCC-------GGUC- -5'
9126 3' -54.4 NC_002512.2 + 223202 0.73 0.739991
Target:  5'- -cGACGggGACGgcgucccGGAGCgcguccCGGCCGGc -3'
miRNA:   3'- guCUGCuuCUGCa------UCUCGa-----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 122778 0.73 0.739991
Target:  5'- aGGACGAGGACGaGGAGgaCgGGCCGc -3'
miRNA:   3'- gUCUGCUUCUGCaUCUCgaG-CCGGUc -5'
9126 3' -54.4 NC_002512.2 + 128410 0.73 0.739991
Target:  5'- ---cCGggGACGgGGGGuCUCGGCCGGu -3'
miRNA:   3'- gucuGCuuCUGCaUCUC-GAGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 200382 0.73 0.749527
Target:  5'- gGGGCGggGGCugcaGGAuCUCGGCCGGg -3'
miRNA:   3'- gUCUGCuuCUGca--UCUcGAGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 226731 0.73 0.749527
Target:  5'- gCGGGCGAcGACGgcgggaccGGGCUCcGGCCGGa -3'
miRNA:   3'- -GUCUGCUuCUGCau------CUCGAG-CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 81197 0.73 0.749527
Target:  5'- cCGGGCGAAGGCGgcgacgAGGGCcaCGGCCc- -3'
miRNA:   3'- -GUCUGCUUCUGCa-----UCUCGa-GCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 53544 0.73 0.749527
Target:  5'- gAGACGGAGACGcUGGAGacgUCGGaCCAc -3'
miRNA:   3'- gUCUGCUUCUGC-AUCUCg--AGCC-GGUc -5'
9126 3' -54.4 NC_002512.2 + 95536 0.73 0.758963
Target:  5'- uGGACGGugcGGGucUGGAGCUCGGCCGc -3'
miRNA:   3'- gUCUGCU---UCUgcAUCUCGAGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 85556 0.72 0.768291
Target:  5'- gGGGCucgaGGAGGCGcgGGAGCgggagCGGCCGGg -3'
miRNA:   3'- gUCUG----CUUCUGCa-UCUCGa----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 113287 0.72 0.768291
Target:  5'- aCAGGCGggGGuCGUgcAGGGCgcucacguaGGCCAGg -3'
miRNA:   3'- -GUCUGCuuCU-GCA--UCUCGag-------CCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.