miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 3' -54.4 NC_002512.2 + 43770 0.7 0.868739
Target:  5'- gCAGACGAGGG---AGAGCUCggGGCCGc -3'
miRNA:   3'- -GUCUGCUUCUgcaUCUCGAG--CCGGUc -5'
9126 3' -54.4 NC_002512.2 + 10367 0.72 0.804342
Target:  5'- -cGACGAAGACG-GGGGUgccgaacgcCGGCCAGc -3'
miRNA:   3'- guCUGCUUCUGCaUCUCGa--------GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 133855 0.72 0.816418
Target:  5'- aGGAcacCGAGGACGUccuggggcggcucgaGGAgcgGCUCGGCCGGc -3'
miRNA:   3'- gUCU---GCUUCUGCA---------------UCU---CGAGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 105504 0.71 0.829828
Target:  5'- uCAGG-GAGGACGgGGGGCUCuGGCUGGa -3'
miRNA:   3'- -GUCUgCUUCUGCaUCUCGAG-CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 11564 0.71 0.845961
Target:  5'- aGGACGAGGGCuacggGGAGCacgagCGGCCGc -3'
miRNA:   3'- gUCUGCUUCUGca---UCUCGa----GCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 43489 0.71 0.845961
Target:  5'- aAGcCGAGGACGcGGAGCUgcagCGGUCGGu -3'
miRNA:   3'- gUCuGCUUCUGCaUCUCGA----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 81930 0.71 0.85375
Target:  5'- gGGACGAcGACGgcgAGGGCggaggGGCCGGc -3'
miRNA:   3'- gUCUGCUuCUGCa--UCUCGag---CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 30412 0.7 0.861344
Target:  5'- aCGGACGggGACGc-GGGCgucgucgCGGCCc- -3'
miRNA:   3'- -GUCUGCuuCUGCauCUCGa------GCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 14694 0.7 0.864326
Target:  5'- -cGACGAAGAgGUAGAcccgcguccGCUCcccgagcagcaggacGGCCAGg -3'
miRNA:   3'- guCUGCUUCUgCAUCU---------CGAG---------------CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 16471 0.72 0.804342
Target:  5'- uCGGGCGGAGACGacAGAGCguaUGGCgCAGc -3'
miRNA:   3'- -GUCUGCUUCUGCa-UCUCGa--GCCG-GUC- -5'
9126 3' -54.4 NC_002512.2 + 19349 0.72 0.795535
Target:  5'- cCAGACGAugccGGAcCGUcgGGGGCUCGGCg-- -3'
miRNA:   3'- -GUCUGCU----UCU-GCA--UCUCGAGCCGguc -5'
9126 3' -54.4 NC_002512.2 + 80846 0.72 0.786585
Target:  5'- gUAGGCGAgccucgGGACGcGGGGCUCGGUguCGGg -3'
miRNA:   3'- -GUCUGCU------UCUGCaUCUCGAGCCG--GUC- -5'
9126 3' -54.4 NC_002512.2 + 226069 0.75 0.65112
Target:  5'- gGGAuCGggGACGUAGGGgaCGGCUg- -3'
miRNA:   3'- gUCU-GCuuCUGCAUCUCgaGCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 128410 0.73 0.739991
Target:  5'- ---cCGggGACGgGGGGuCUCGGCCGGu -3'
miRNA:   3'- gucuGCuuCUGCaUCUC-GAGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 53544 0.73 0.749527
Target:  5'- gAGACGGAGACGcUGGAGacgUCGGaCCAc -3'
miRNA:   3'- gUCUGCUUCUGC-AUCUCg--AGCC-GGUc -5'
9126 3' -54.4 NC_002512.2 + 81197 0.73 0.749527
Target:  5'- cCGGGCGAAGGCGgcgacgAGGGCcaCGGCCc- -3'
miRNA:   3'- -GUCUGCUUCUGCa-----UCUCGa-GCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 113287 0.72 0.768291
Target:  5'- aCAGGCGggGGuCGUgcAGGGCgcucacguaGGCCAGg -3'
miRNA:   3'- -GUCUGCuuCU-GCA--UCUCGag-------CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 85556 0.72 0.768291
Target:  5'- gGGGCucgaGGAGGCGcgGGAGCgggagCGGCCGGg -3'
miRNA:   3'- gUCUG----CUUCUGCa-UCUCGa----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 21243 0.72 0.777501
Target:  5'- gAGACGggGGCGgagAGGGCUgGaGCgGGa -3'
miRNA:   3'- gUCUGCuuCUGCa--UCUCGAgC-CGgUC- -5'
9126 3' -54.4 NC_002512.2 + 71004 0.72 0.777501
Target:  5'- gGGACGAAgGACGgGGGGCcgccgcCGGCCGGu -3'
miRNA:   3'- gUCUGCUU-CUGCaUCUCGa-----GCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.