miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 3' -54.4 NC_002512.2 + 140938 0.66 0.975451
Target:  5'- gGGACGgcGACGaGGcggaaggggggcGGCUCGGUCGc -3'
miRNA:   3'- gUCUGCuuCUGCaUC------------UCGAGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 103346 0.66 0.972867
Target:  5'- gGGGCGucGACGaguccGGGGCcgCGGUCGGg -3'
miRNA:   3'- gUCUGCuuCUGCa----UCUCGa-GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 81025 0.66 0.977849
Target:  5'- gCAGGCGGAGGCGgc-AGC-CGGCg-- -3'
miRNA:   3'- -GUCUGCUUCUGCaucUCGaGCCGguc -5'
9126 3' -54.4 NC_002512.2 + 147749 0.66 0.975451
Target:  5'- gCGGACcGAGACGUGcgccAGCgCGGCCGu -3'
miRNA:   3'- -GUCUGcUUCUGCAUc---UCGaGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 108417 0.66 0.975451
Target:  5'- aGGACGggGACGgcG-GCg-GGCgCGGg -3'
miRNA:   3'- gUCUGCuuCUGCauCuCGagCCG-GUC- -5'
9126 3' -54.4 NC_002512.2 + 21307 0.66 0.972867
Target:  5'- cCGGACccgcugcGCGUcGAGCUCGGCCuGa -3'
miRNA:   3'- -GUCUGcuuc---UGCAuCUCGAGCCGGuC- -5'
9126 3' -54.4 NC_002512.2 + 75071 0.66 0.976432
Target:  5'- cCGGGCGgcGACGUcgaggcgccguuucgGGGGCUCGacgucGCCGc -3'
miRNA:   3'- -GUCUGCuuCUGCA---------------UCUCGAGC-----CGGUc -5'
9126 3' -54.4 NC_002512.2 + 80711 0.66 0.980071
Target:  5'- gGGGCGAGGGCGcgcGGGCccgCGGgCGGc -3'
miRNA:   3'- gUCUGCUUCUGCau-CUCGa--GCCgGUC- -5'
9126 3' -54.4 NC_002512.2 + 24771 0.66 0.982122
Target:  5'- gAGACGAAGACcc---GCUCGGguCCGGg -3'
miRNA:   3'- gUCUGCUUCUGcaucuCGAGCC--GGUC- -5'
9126 3' -54.4 NC_002512.2 + 31497 0.66 0.972328
Target:  5'- aGGACGAGGAUGguccAGAGCcugaucacggaGGCCAc -3'
miRNA:   3'- gUCUGCUUCUGCa---UCUCGag---------CCGGUc -5'
9126 3' -54.4 NC_002512.2 + 57211 0.66 0.977849
Target:  5'- aGGACGGAGACG-AGGGCcgagacgCGGgCGu -3'
miRNA:   3'- gUCUGCUUCUGCaUCUCGa------GCCgGUc -5'
9126 3' -54.4 NC_002512.2 + 129484 0.66 0.980071
Target:  5'- -cGACGAGGACGccgucgccaacUGGAGCUCGcuCCu- -3'
miRNA:   3'- guCUGCUUCUGC-----------AUCUCGAGCc-GGuc -5'
9126 3' -54.4 NC_002512.2 + 128179 0.66 0.980071
Target:  5'- gGGACGAGGuCGccGAGCg-GGCCGc -3'
miRNA:   3'- gUCUGCUUCuGCauCUCGagCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 9035 0.66 0.973923
Target:  5'- gCGGACGAcguAGACGcGacacagcccgucgacGAGCaCGGCCAGc -3'
miRNA:   3'- -GUCUGCU---UCUGCaU---------------CUCGaGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 11124 0.66 0.980071
Target:  5'- cCGGACGggGAacCGaGGAGUccgagGGCCGGa -3'
miRNA:   3'- -GUCUGCuuCU--GCaUCUCGag---CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 22069 0.66 0.977849
Target:  5'- gAGACGccGAGuCGggguucggAGAGCUCguccGGCCGGg -3'
miRNA:   3'- gUCUGC--UUCuGCa-------UCUCGAG----CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 228225 0.66 0.982122
Target:  5'- cCGGGCGAGacGGCGggaAGGGCgaaCGuGCCGGa -3'
miRNA:   3'- -GUCUGCUU--CUGCa--UCUCGa--GC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 53689 0.66 0.972598
Target:  5'- aCAGGCu--GGCGUacgccgaGGAGCuggagaagcugUCGGCCAGg -3'
miRNA:   3'- -GUCUGcuuCUGCA-------UCUCG-----------AGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 17522 0.66 0.982122
Target:  5'- -cGGCGucGGCGUAGg---CGGCCAGc -3'
miRNA:   3'- guCUGCuuCUGCAUCucgaGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 71549 0.66 0.982122
Target:  5'- gGGuguCGAAGACGguccGGAGCgcggacUCGcGCCGGa -3'
miRNA:   3'- gUCu--GCUUCUGCa---UCUCG------AGC-CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.