miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 3' -54.4 NC_002512.2 + 155 0.67 0.967122
Target:  5'- gGGGCGccGGCGgaGGAGCgCGcGCCGGg -3'
miRNA:   3'- gUCUGCuuCUGCa-UCUCGaGC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 185 0.7 0.875928
Target:  5'- gGGACGggGGCGagaaGGGGCcCGGgCGGa -3'
miRNA:   3'- gUCUGCuuCUGCa---UCUCGaGCCgGUC- -5'
9126 3' -54.4 NC_002512.2 + 2838 0.67 0.967428
Target:  5'- cCGGACGAcGGCGggcagcugcggcacGAGCUUGGgCAGa -3'
miRNA:   3'- -GUCUGCUuCUGCau------------CUCGAGCCgGUC- -5'
9126 3' -54.4 NC_002512.2 + 5901 0.67 0.960565
Target:  5'- uGGACGGcgGGGCGcgcgGGGGauaCGGCCAGu -3'
miRNA:   3'- gUCUGCU--UCUGCa---UCUCga-GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 6444 0.69 0.908629
Target:  5'- gCGGGCGccGAGAC--AGGGgUCGGCCGGc -3'
miRNA:   3'- -GUCUGC--UUCUGcaUCUCgAGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 7136 0.69 0.908629
Target:  5'- cCAGACGAgggAGACGUccAGcAGCU-GGCCGu -3'
miRNA:   3'- -GUCUGCU---UCUGCA--UC-UCGAgCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 8096 0.67 0.970093
Target:  5'- -cGuCGccGGCGUAGAGCagGcGCCAGg -3'
miRNA:   3'- guCuGCuuCUGCAUCUCGagC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 8226 0.68 0.932724
Target:  5'- cCAGACGuAGGCcucgagcgucgcgccGUAGAGCagGGCCGc -3'
miRNA:   3'- -GUCUGCuUCUG---------------CAUCUCGagCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 8985 0.7 0.896212
Target:  5'- uGGACGAAcuCGUAGAGgucgUCGGCCAc -3'
miRNA:   3'- gUCUGCUUcuGCAUCUCg---AGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 9035 0.66 0.973923
Target:  5'- gCGGACGAcguAGACGcGacacagcccgucgacGAGCaCGGCCAGc -3'
miRNA:   3'- -GUCUGCU---UCUGCaU---------------CUCGaGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 10367 0.72 0.804342
Target:  5'- -cGACGAAGACG-GGGGUgccgaacgcCGGCCAGc -3'
miRNA:   3'- guCUGCUUCUGCaUCUCGa--------GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 10949 0.67 0.956969
Target:  5'- -cGACGAGGACGccGGcGCccUCGGgCCAGg -3'
miRNA:   3'- guCUGCUUCUGCa-UCuCG--AGCC-GGUC- -5'
9126 3' -54.4 NC_002512.2 + 11050 0.69 0.925542
Target:  5'- -cGGCGAAGuCGcAGAGCagGGCCGc -3'
miRNA:   3'- guCUGCUUCuGCaUCUCGagCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 11124 0.66 0.980071
Target:  5'- cCGGACGggGAacCGaGGAGUccgagGGCCGGa -3'
miRNA:   3'- -GUCUGCuuCU--GCaUCUCGag---CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 11564 0.71 0.845961
Target:  5'- aGGACGAGGGCuacggGGAGCacgagCGGCCGc -3'
miRNA:   3'- gUCUGCUUCUGca---UCUCGa----GCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 14038 0.68 0.944863
Target:  5'- aCAGGuuccCGAAGGCGgcGGcGCguucCGGCCGGg -3'
miRNA:   3'- -GUCU----GCUUCUGCauCU-CGa---GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 14244 0.69 0.900032
Target:  5'- -uGACGGcccgcagccccacGGCGaAGAGCUCGGCCAc -3'
miRNA:   3'- guCUGCUu------------CUGCaUCUCGAGCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 14320 0.7 0.868739
Target:  5'- gUAGGCGuAGACGacgccgAGGGCgccgaCGGCCAGc -3'
miRNA:   3'- -GUCUGCuUCUGCa-----UCUCGa----GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 14395 0.67 0.960565
Target:  5'- --cACGGAGGCGaagUAGAGCagGcGCCAGg -3'
miRNA:   3'- gucUGCUUCUGC---AUCUCGagC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 14694 0.7 0.864326
Target:  5'- -cGACGAAGAgGUAGAcccgcguccGCUCcccgagcagcaggacGGCCAGg -3'
miRNA:   3'- guCUGCUUCUgCAUCU---------CGAG---------------CCGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.