miRNA display CGI


Results 61 - 80 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 30376 0.73 0.243073
Target:  5'- uCGCCcgacgaCCUCgaccugauCCUCGCGGCCCUGACGg -3'
miRNA:   3'- -GCGGca----GGAG--------GGGGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 118597 0.73 0.222887
Target:  5'- gGCgGcCCUCuCCCCGCGGCggCCGACa -3'
miRNA:   3'- gCGgCaGGAG-GGGGCGCCGg-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 222370 0.73 0.232796
Target:  5'- gGCCGcCUUCCCCgGCgGGCUCUGGCu -3'
miRNA:   3'- gCGGCaGGAGGGGgCG-CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 139376 0.73 0.243073
Target:  5'- cCGUCGUCCgCCgCCGgccuCGGCCCCGAUc -3'
miRNA:   3'- -GCGGCAGGaGGgGGC----GCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 114010 0.72 0.248351
Target:  5'- cCGCCGUCggCCCCgcaGCGGCaCCgGGCGc -3'
miRNA:   3'- -GCGGCAGgaGGGGg--CGCCG-GGgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6073 0.72 0.247819
Target:  5'- gCGCCGUCgUCguCCCgGCGGucgccgccgacguCCCCGGCGa -3'
miRNA:   3'- -GCGGCAGgAG--GGGgCGCC-------------GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 147832 0.72 0.276174
Target:  5'- gCGCgCGacUCCUCCCgCCGCGaccGCCgCCGGCGc -3'
miRNA:   3'- -GCG-GC--AGGAGGG-GGCGC---CGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 218185 0.72 0.267009
Target:  5'- aCGCCGgcUCCUgccucgccccucgggCCCCCGCcucgGGCCgCGGCGg -3'
miRNA:   3'- -GCGGC--AGGA---------------GGGGGCG----CCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 138634 0.72 0.259192
Target:  5'- gCGCCGggcaUCUCCCCguaCGCGGCgucCCUGACGa -3'
miRNA:   3'- -GCGGCa---GGAGGGG---GCGCCG---GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 85066 0.72 0.270416
Target:  5'- gCGCCGUg--CCCUCGUGGCCCCcguaGGCGu -3'
miRNA:   3'- -GCGGCAggaGGGGGCGCCGGGG----CUGC- -5'
9131 3' -67.1 NC_002512.2 + 98749 0.72 0.270416
Target:  5'- gGCCGcCCUgCCCCGCcaucgGGUCCUGGCc -3'
miRNA:   3'- gCGGCaGGAgGGGGCG-----CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 81352 0.72 0.270416
Target:  5'- gGgCG-CCUCCCUCGCGGCCggGGCGg -3'
miRNA:   3'- gCgGCaGGAGGGGGCGCCGGggCUGC- -5'
9131 3' -67.1 NC_002512.2 + 138349 0.72 0.269846
Target:  5'- gCGCCaggugGUCCUCCUCCaggaccaGCGGCUCCGAg- -3'
miRNA:   3'- -GCGG-----CAGGAGGGGG-------CGCCGGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 118699 0.72 0.253724
Target:  5'- gCGCCGUgggCUUCCCCCGCcuGCCgcucgCCGGCGa -3'
miRNA:   3'- -GCGGCA---GGAGGGGGCGc-CGG-----GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 1862 0.72 0.252102
Target:  5'- cCGCCGUCCggucgCCCCuCGUcccgcgucccguccGGCUCCGGCc -3'
miRNA:   3'- -GCGGCAGGa----GGGG-GCG--------------CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 33477 0.71 0.319226
Target:  5'- gGCCG-CCgcCCCCCGCGuCCCCG-CGc -3'
miRNA:   3'- gCGGCaGGa-GGGGGCGCcGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 148062 0.71 0.315346
Target:  5'- uCGUCGUCCUCCUCggagaccucgcggcgCGuCGGCCCuCGugGc -3'
miRNA:   3'- -GCGGCAGGAGGGG---------------GC-GCCGGG-GCugC- -5'
9131 3' -67.1 NC_002512.2 + 72513 0.71 0.312779
Target:  5'- uCGuCCGgucCCUgCCCgGCGGCCCgGACc -3'
miRNA:   3'- -GC-GGCa--GGAgGGGgCGCCGGGgCUGc -5'
9131 3' -67.1 NC_002512.2 + 24246 0.71 0.312779
Target:  5'- cCGCCGacggCgUCCCCCGCGGgCaggaaggaCGGCGg -3'
miRNA:   3'- -GCGGCa---GgAGGGGGCGCCgGg-------GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 9669 0.71 0.312779
Target:  5'- gCGCacuCGUCC-CCCgggCCGCcgucgGGCCCCGGCGg -3'
miRNA:   3'- -GCG---GCAGGaGGG---GGCG-----CCGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.