miRNA display CGI


Results 61 - 80 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 24901 0.69 0.374357
Target:  5'- cCGCCuUCCggUCCCCGUcGCCCgCGGCGu -3'
miRNA:   3'- -GCGGcAGGa-GGGGGCGcCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 25055 0.73 0.243073
Target:  5'- cCGUCGUCCUCCCggacggagccgCCGCGcCCCCGggacGCGg -3'
miRNA:   3'- -GCGGCAGGAGGG-----------GGCGCcGGGGC----UGC- -5'
9131 3' -67.1 NC_002512.2 + 25229 0.67 0.493634
Target:  5'- cCGCCGgcgaUCCCCCGCGcGUCgCCGuccCGg -3'
miRNA:   3'- -GCGGCagg-AGGGGGCGC-CGG-GGCu--GC- -5'
9131 3' -67.1 NC_002512.2 + 27361 0.68 0.46
Target:  5'- gGUCGUCCgCCCCCGCcGCCgCCucCGc -3'
miRNA:   3'- gCGGCAGGaGGGGGCGcCGG-GGcuGC- -5'
9131 3' -67.1 NC_002512.2 + 28020 0.79 0.085082
Target:  5'- cCGCCGUCCUCggaCCGCaGGCCCCaGGCGa -3'
miRNA:   3'- -GCGGCAGGAGgg-GGCG-CCGGGG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 28161 0.7 0.352947
Target:  5'- cCGUCGUCUcCCCCCGCGacgacgacgccGCCgCCGAUc -3'
miRNA:   3'- -GCGGCAGGaGGGGGCGC-----------CGG-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 28810 0.66 0.536288
Target:  5'- uGCUGUCCcagaCCCCGCacaugugGGCCCgGuCGa -3'
miRNA:   3'- gCGGCAGGag--GGGGCG-------CCGGGgCuGC- -5'
9131 3' -67.1 NC_002512.2 + 30077 0.66 0.56303
Target:  5'- -cCCGaUCCgCCCCCGCGGuaaacaucccuguCCCgCGAUGg -3'
miRNA:   3'- gcGGC-AGGaGGGGGCGCC-------------GGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 30376 0.73 0.243073
Target:  5'- uCGCCcgacgaCCUCgaccugauCCUCGCGGCCCUGACGg -3'
miRNA:   3'- -GCGGca----GGAG--------GGGGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 33477 0.71 0.319226
Target:  5'- gGCCG-CCgcCCCCCGCGuCCCCG-CGc -3'
miRNA:   3'- gCGGCaGGa-GGGGGCGCcGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 34529 0.66 0.572929
Target:  5'- aGCCGaCCagCaCCCGgGGuUCCCGGCGc -3'
miRNA:   3'- gCGGCaGGagG-GGGCgCC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 34826 0.69 0.411946
Target:  5'- cCGaCCGgacgacCCUCCcgCCCGCGGgCCgCGGCGg -3'
miRNA:   3'- -GC-GGCa-----GGAGG--GGGCGCCgGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 36512 0.67 0.47667
Target:  5'- uGUCGUCC-CCgCCCGCGGCgaCGAa- -3'
miRNA:   3'- gCGGCAGGaGG-GGGCGCCGggGCUgc -5'
9131 3' -67.1 NC_002512.2 + 37278 0.69 0.381687
Target:  5'- cCGCCGUCg-CCCgCCGCGGCgCgCCGcagcaGCGg -3'
miRNA:   3'- -GCGGCAGgaGGG-GGCGCCG-G-GGC-----UGC- -5'
9131 3' -67.1 NC_002512.2 + 37684 0.69 0.404242
Target:  5'- gGCCGaaggguccgggUCCUCCCcagCCGCGGCgCagGACGg -3'
miRNA:   3'- gCGGC-----------AGGAGGG---GGCGCCGgGg-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 39458 0.66 0.554966
Target:  5'- gGUCGgugacggCCcgCUCCCGCaGcCCCCGGCGa -3'
miRNA:   3'- gCGGCa------GGa-GGGGGCGcC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 39996 0.71 0.300182
Target:  5'- cCGCCGUCCUCgccgccgccguCUCCGCcGUCuCCGACGc -3'
miRNA:   3'- -GCGGCAGGAG-----------GGGGCGcCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 40300 0.71 0.306431
Target:  5'- aCGUCGUCCcgaggaCCCgGCGGCCCgGuCGg -3'
miRNA:   3'- -GCGGCAGGag----GGGgCGCCGGGgCuGC- -5'
9131 3' -67.1 NC_002512.2 + 41201 0.66 0.563928
Target:  5'- cCGCCGugaUCgUCCCcgagaccgCCGCGGUCggaCGACGg -3'
miRNA:   3'- -GCGGC---AGgAGGG--------GGCGCCGGg--GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 41249 0.7 0.346005
Target:  5'- cCGCCG-CCggcgCCCuuGCGGCCCgaGCGc -3'
miRNA:   3'- -GCGGCaGGa---GGGggCGCCGGGgcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.