miRNA display CGI


Results 41 - 60 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 10194 0.67 0.47667
Target:  5'- gCGCCGacgcUCCUCCUCguccucggGCGGCgcgcccagauCCCGACGg -3'
miRNA:   3'- -GCGGC----AGGAGGGGg-------CGCCG----------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 10570 0.75 0.170739
Target:  5'- aCGCCGaCgCUCuCCCCGUGGCCgCgGACGa -3'
miRNA:   3'- -GCGGCaG-GAG-GGGGCGCCGG-GgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 11273 0.67 0.47667
Target:  5'- aCGCgCGUCCUUCgagUCCGCGGgcgagaCCCCGGgGa -3'
miRNA:   3'- -GCG-GCAGGAGG---GGGCGCC------GGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 11667 0.73 0.237888
Target:  5'- gCGCCG-CggCCCgCCGCGGCCCgaGGCGg -3'
miRNA:   3'- -GCGGCaGgaGGG-GGCGCCGGGg-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 12096 0.7 0.339162
Target:  5'- aCGCCGaUCCgCCagccggCCGCGaCCCCGGCGa -3'
miRNA:   3'- -GCGGC-AGGaGGg-----GGCGCcGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 12291 0.67 0.510869
Target:  5'- uCGCCGaCgaCCCCCgagGCGGCgCCGcCGg -3'
miRNA:   3'- -GCGGCaGgaGGGGG---CGCCGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 12774 0.67 0.529229
Target:  5'- cCGCCG-CaggacucggcggcgCCCCCGCuGCCCCuGCGg -3'
miRNA:   3'- -GCGGCaGga------------GGGGGCGcCGGGGcUGC- -5'
9131 3' -67.1 NC_002512.2 + 13661 0.66 0.591024
Target:  5'- uCGCCGcggcUCCagCUCCCGgacgaggcgaCGGCCgCGGCGg -3'
miRNA:   3'- -GCGGC----AGGa-GGGGGC----------GCCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 14300 0.68 0.449332
Target:  5'- aCGCUGUCCUCCCacggguuguaggCGUagacgacgccgagGGCgCCGACGg -3'
miRNA:   3'- -GCGGCAGGAGGGg-----------GCG-------------CCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 14747 0.76 0.135906
Target:  5'- uCGUCG-CCUCCCCCgucgcGCGGaCCCCGGCc -3'
miRNA:   3'- -GCGGCaGGAGGGGG-----CGCC-GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 15695 0.68 0.43559
Target:  5'- gCGCagcggGUCCUCCUCCGCgacgaugacGGgCUCGACGu -3'
miRNA:   3'- -GCGg----CAGGAGGGGGCG---------CCgGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 16318 0.67 0.47667
Target:  5'- uCGCUcaaGUCCUCCUCUccgagGCGGaCCCCG-CGc -3'
miRNA:   3'- -GCGG---CAGGAGGGGG-----CGCC-GGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 16981 0.66 0.563928
Target:  5'- uGCCGU--UCCUCC-CGGCgCCGACu -3'
miRNA:   3'- gCGGCAggAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 17942 0.68 0.468297
Target:  5'- aGCCGacCCUCUcguccacggacuCCCGUcggGGUCCCGACGc -3'
miRNA:   3'- gCGGCa-GGAGG------------GGGCG---CCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 18089 0.66 0.537172
Target:  5'- gCGCCGcggcgggaCggCCCCCGCGGCcaCCCGGg- -3'
miRNA:   3'- -GCGGCag------Ga-GGGGGCGCCG--GGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 18544 0.66 0.572929
Target:  5'- gGCCGcgcgCgUCCCCCaGCgcccgGGCCCgGACc -3'
miRNA:   3'- gCGGCa---GgAGGGGG-CG-----CCGGGgCUGc -5'
9131 3' -67.1 NC_002512.2 + 20752 0.7 0.367124
Target:  5'- uCGCCGUCguCUCCCacgaCGCaGUCCCgGACGu -3'
miRNA:   3'- -GCGGCAG--GAGGGg---GCGcCGGGG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 24246 0.71 0.312779
Target:  5'- cCGCCGacggCgUCCCCCGCGGgCaggaaggaCGGCGg -3'
miRNA:   3'- -GCGGCa---GgAGGGGGCGCCgGg-------GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 24382 0.66 0.546046
Target:  5'- aGUCGUCgUCCUCCGCGaCgCCGuCGu -3'
miRNA:   3'- gCGGCAGgAGGGGGCGCcGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 24819 0.68 0.468297
Target:  5'- cCGCCGcUCUccagccaguaggUCCgggCCCGCGGCCggUCGGCGg -3'
miRNA:   3'- -GCGGC-AGG------------AGG---GGGCGCCGG--GGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.