miRNA display CGI


Results 21 - 40 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 5337 0.68 0.468297
Target:  5'- uCGCCGaa-UCCCCCGCgaccgucaucGGUCUCGugGa -3'
miRNA:   3'- -GCGGCaggAGGGGGCG----------CCGGGGCugC- -5'
9131 3' -67.1 NC_002512.2 + 5527 0.67 0.510869
Target:  5'- gGaCCGaggUCUCCCgcCCGCGaCCCCGGCGc -3'
miRNA:   3'- gC-GGCa--GGAGGG--GGCGCcGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 5643 0.74 0.202797
Target:  5'- gCGCCGacccgCCUCCCCCGCucauuaaagaucugGaaaacGCCCCGGCGu -3'
miRNA:   3'- -GCGGCa----GGAGGGGGCG--------------C-----CGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 5837 0.79 0.085082
Target:  5'- aCGCCcgacgaGUCgUCCCCgGCGGCCCCGuCGg -3'
miRNA:   3'- -GCGG------CAGgAGGGGgCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 5991 0.66 0.554072
Target:  5'- gCGCCGcucccgcUCCUCCUCCuCGGCCUccuccuCGGCc -3'
miRNA:   3'- -GCGGC-------AGGAGGGGGcGCCGGG------GCUGc -5'
9131 3' -67.1 NC_002512.2 + 6073 0.72 0.247819
Target:  5'- gCGCCGUCgUCguCCCgGCGGucgccgccgacguCCCCGGCGa -3'
miRNA:   3'- -GCGGCAGgAG--GGGgCGCC-------------GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6170 0.74 0.208699
Target:  5'- gGUCGUCCUCCCCgUGCGaGUCgCCGGCc -3'
miRNA:   3'- gCGGCAGGAGGGG-GCGC-CGG-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 6374 0.74 0.199679
Target:  5'- uGCCGUUCUCCgCCGUGGUCgucgCGACGg -3'
miRNA:   3'- gCGGCAGGAGGgGGCGCCGGg---GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6619 0.66 0.590117
Target:  5'- gCGgCGUCCcgCCCCCcgacgacGCGGaCgCCCGAgGa -3'
miRNA:   3'- -GCgGCAGGa-GGGGG-------CGCC-G-GGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 6694 0.66 0.535404
Target:  5'- aCGCCGUCC-CCgUCggGCGGCCCguccacguaccaGACGa -3'
miRNA:   3'- -GCGGCAGGaGGgGG--CGCCGGGg-----------CUGC- -5'
9131 3' -67.1 NC_002512.2 + 7297 0.74 0.194863
Target:  5'- gGCCGgacaggCCUCCUCCGCgacggcgGGCCgCGGCGg -3'
miRNA:   3'- gCGGCa-----GGAGGGGGCG-------CCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 7346 0.67 0.493634
Target:  5'- uCGCCGUagccCCggCCCaCCgcgacgGCGGCCgCGGCGg -3'
miRNA:   3'- -GCGGCA----GGa-GGG-GG------CGCCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 7475 0.66 0.554966
Target:  5'- gGCUG-CCggCCCCCGCcgaaGCCgCGGCGc -3'
miRNA:   3'- gCGGCaGGa-GGGGGCGc---CGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 7636 0.66 0.549609
Target:  5'- gGCCaUCaCgagaCCCgCCacggcgacgaaggacGCGGCCCCGACGg -3'
miRNA:   3'- gCGGcAG-Ga---GGG-GG---------------CGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 8490 0.7 0.346005
Target:  5'- cCGCCG-CCUCCccgCCCGCG-CCCCGccCGa -3'
miRNA:   3'- -GCGGCaGGAGG---GGGCGCcGGGGCu-GC- -5'
9131 3' -67.1 NC_002512.2 + 8596 0.69 0.407313
Target:  5'- cCGCCGaccccggCCUCCCCCcccuccacgcgccccGCGucCCCCGACu -3'
miRNA:   3'- -GCGGCa------GGAGGGGG---------------CGCc-GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 8894 0.67 0.492779
Target:  5'- aGCCGUuggggcacucgacCCUCCUggCCaggGCGGCCUCGGCc -3'
miRNA:   3'- gCGGCA-------------GGAGGG--GG---CGCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 9559 0.77 0.126802
Target:  5'- gGCCGUCCggcCCCCCGgagcccggccccCGGCCCCccGGCGg -3'
miRNA:   3'- gCGGCAGGa--GGGGGC------------GCCGGGG--CUGC- -5'
9131 3' -67.1 NC_002512.2 + 9669 0.71 0.312779
Target:  5'- gCGCacuCGUCC-CCCgggCCGCcgucgGGCCCCGGCGg -3'
miRNA:   3'- -GCG---GCAGGaGGG---GGCG-----CCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 10034 0.66 0.537172
Target:  5'- -cCCGUCCgcgauccgCCCCCGggcCGGaccCCCCGACc -3'
miRNA:   3'- gcGGCAGGa-------GGGGGC---GCC---GGGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.