miRNA display CGI


Results 1 - 20 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 327 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 977 0.66 0.537172
Target:  5'- uCGUCGUCCUCUCUCGCGucgucuccuCCCUGcCGu -3'
miRNA:   3'- -GCGGCAGGAGGGGGCGCc--------GGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 1377 0.66 0.591024
Target:  5'- -uCCGUCuCUCCUCCGCGucccucucGCCCCuccGCGu -3'
miRNA:   3'- gcGGCAG-GAGGGGGCGC--------CGGGGc--UGC- -5'
9131 3' -67.1 NC_002512.2 + 1606 0.67 0.490218
Target:  5'- -cCCGUCCUCCCucucccacccgguCCGCGGUcagucgcccccgcgUCCGGCa -3'
miRNA:   3'- gcGGCAGGAGGG-------------GGCGCCG--------------GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 1670 0.74 0.199679
Target:  5'- cCGCCGUCUcgCCCggccucgaCCGCGGCCUCGAa- -3'
miRNA:   3'- -GCGGCAGGa-GGG--------GGCGCCGGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 1862 0.72 0.252102
Target:  5'- cCGCCGUCCggucgCCCCuCGUcccgcgucccguccGGCUCCGGCc -3'
miRNA:   3'- -GCGGCAGGa----GGGG-GCG--------------CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 1919 0.67 0.51958
Target:  5'- gCGCCGgggCCcuccucuccggcUCCCCCGCGcucCCCCGcCu -3'
miRNA:   3'- -GCGGCa--GG------------AGGGGGCGCc--GGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 2180 0.66 0.540716
Target:  5'- gGaCCGUaCCgcgCCCCCGCcgccgucgucgucucGGUCgCCGGCGg -3'
miRNA:   3'- gC-GGCA-GGa--GGGGGCG---------------CCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 2229 0.66 0.537172
Target:  5'- cCGCCGcucuUCCUCCggaCCCGgGcGCUCCGuCGc -3'
miRNA:   3'- -GCGGC----AGGAGG---GGGCgC-CGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 2374 0.68 0.427621
Target:  5'- cCGCCGgacucUCC-CCCCCG-GGUCgCGGCGu -3'
miRNA:   3'- -GCGGC-----AGGaGGGGGCgCCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 2499 0.66 0.590117
Target:  5'- gGCCuUggggaacggaUCUCCCCCgacgccgGCGGCCCCGGg- -3'
miRNA:   3'- gCGGcA----------GGAGGGGG-------CGCCGGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 2890 0.67 0.510869
Target:  5'- cCGgUGUCCUCgUCCGacucgauGGCCCUGACc -3'
miRNA:   3'- -GCgGCAGGAGgGGGCg------CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 2932 0.74 0.199679
Target:  5'- aGCUucuuggCCUCCCgCGCGGCCuuGGCGa -3'
miRNA:   3'- gCGGca----GGAGGGgGCGCCGGggCUGC- -5'
9131 3' -67.1 NC_002512.2 + 2982 0.67 0.510869
Target:  5'- gGCC-UCCUuggCCCCCGCGuGgCCCGGu- -3'
miRNA:   3'- gCGGcAGGA---GGGGGCGC-CgGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 3028 0.69 0.411946
Target:  5'- -cCCGggCCUCCCUgGCGGCCUgcuccgccuugaCGGCGg -3'
miRNA:   3'- gcGGCa-GGAGGGGgCGCCGGG------------GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 3162 0.79 0.095768
Target:  5'- cCGCCGUCgUCgCCCGCGGCCUcccgucgcuCGACGc -3'
miRNA:   3'- -GCGGCAGgAGgGGGCGCCGGG---------GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 3285 0.71 0.306431
Target:  5'- uCGCCGUCCccuccUCCCCCG-GGCCgCGcCc -3'
miRNA:   3'- -GCGGCAGG-----AGGGGGCgCCGGgGCuGc -5'
9131 3' -67.1 NC_002512.2 + 3566 0.67 0.510869
Target:  5'- uGCCGUCCcgagCCacggCCCacaGGCCCCGGgGg -3'
miRNA:   3'- gCGGCAGGa---GG----GGGcg-CCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 4085 0.68 0.43559
Target:  5'- gGCCacCCggCCgCCCGCGGCCcggCCGGCGc -3'
miRNA:   3'- gCGGcaGGa-GG-GGGCGCCGG---GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 4365 0.71 0.29039
Target:  5'- cCGCCGUCCcgUccgcgaagcccgggaCCCCCgcgGCGGCCCCGuagaucGCGg -3'
miRNA:   3'- -GCGGCAGG--A---------------GGGGG---CGCCGGGGC------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.