miRNA display CGI


Results 1 - 20 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 5837 0.79 0.085082
Target:  5'- aCGCCcgacgaGUCgUCCCCgGCGGCCCCGuCGg -3'
miRNA:   3'- -GCGG------CAGgAGGGGgCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 2932 0.74 0.199679
Target:  5'- aGCUucuuggCCUCCCgCGCGGCCuuGGCGa -3'
miRNA:   3'- gCGGca----GGAGGGgGCGCCGGggCUGC- -5'
9131 3' -67.1 NC_002512.2 + 1670 0.74 0.199679
Target:  5'- cCGCCGUCUcgCCCggccucgaCCGCGGCCUCGAa- -3'
miRNA:   3'- -GCGGCAGGa-GGG--------GGCGCCGGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 119145 0.74 0.199237
Target:  5'- aGCCGUCCuUCCgCCUGCacaacacGGCCCUGGCc -3'
miRNA:   3'- gCGGCAGG-AGG-GGGCG-------CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 98020 0.74 0.197039
Target:  5'- gGCCGUCCugaUCCgCCGCGGCgucaucucuagccugCCCGGCu -3'
miRNA:   3'- gCGGCAGG---AGGgGGCGCCG---------------GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 7297 0.74 0.194863
Target:  5'- gGCCGgacaggCCUCCUCCGCgacggcgGGCCgCGGCGg -3'
miRNA:   3'- gCGGCa-----GGAGGGGGCG-------CCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 105563 0.75 0.170739
Target:  5'- aGCCGcagcaCgUCCgCCGCGGCCCCGAUc -3'
miRNA:   3'- gCGGCa----GgAGGgGGCGCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 10570 0.75 0.170739
Target:  5'- aCGCCGaCgCUCuCCCCGUGGCCgCgGACGa -3'
miRNA:   3'- -GCGGCaG-GAG-GGGGCGCCGG-GgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 133664 0.75 0.163187
Target:  5'- uCGCCG-CCgCCgCCGCGGCCgCCGugGc -3'
miRNA:   3'- -GCGGCaGGaGGgGGCGCCGG-GGCugC- -5'
9131 3' -67.1 NC_002512.2 + 142016 0.75 0.159525
Target:  5'- gGCCGU-CUCUUCCGCGGCCgggggCCGGCGa -3'
miRNA:   3'- gCGGCAgGAGGGGGCGCCGG-----GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 106727 0.76 0.145607
Target:  5'- gCGCUccuGUCCgCCUCCuCGGCCCCGGCGg -3'
miRNA:   3'- -GCGG---CAGGaGGGGGcGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 137306 0.76 0.135906
Target:  5'- cCGCCGccCCUCCCggCCGCGGCgUCGGCGc -3'
miRNA:   3'- -GCGGCa-GGAGGG--GGCGCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 14747 0.76 0.135906
Target:  5'- uCGUCG-CCUCCCCCgucgcGCGGaCCCCGGCc -3'
miRNA:   3'- -GCGGCaGGAGGGGG-----CGCC-GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 9559 0.77 0.126802
Target:  5'- gGCCGUCCggcCCCCCGgagcccggccccCGGCCCCccGGCGg -3'
miRNA:   3'- gCGGCAGGa--GGGGGC------------GCCGGGG--CUGC- -5'
9131 3' -67.1 NC_002512.2 + 155242 0.78 0.107715
Target:  5'- gGCCGUCCcgCCCgUCGCGGCgUCGACGg -3'
miRNA:   3'- gCGGCAGGa-GGG-GGCGCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 154117 0.78 0.102777
Target:  5'- -cCCGUCCUCCCgggcuCCGCGGUCuCCGACGc -3'
miRNA:   3'- gcGGCAGGAGGG-----GGCGCCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 3162 0.79 0.095768
Target:  5'- cCGCCGUCgUCgCCCGCGGCCUcccgucgcuCGACGc -3'
miRNA:   3'- -GCGGCAGgAGgGGGCGCCGGG---------GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 65668 0.79 0.093534
Target:  5'- uGCCGaugcCCUUCCCgGCGGCCCCGAgGc -3'
miRNA:   3'- gCGGCa---GGAGGGGgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 28020 0.79 0.085082
Target:  5'- cCGCCGUCCUCggaCCGCaGGCCCCaGGCGa -3'
miRNA:   3'- -GCGGCAGGAGgg-GGCG-CCGGGG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 81459 0.8 0.072016
Target:  5'- -cCCGUCCUCCCCCgGCGGUCCCG-Ca -3'
miRNA:   3'- gcGGCAGGAGGGGG-CGCCGGGGCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.