miRNA display CGI


Results 1 - 20 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 98846 1.07 0.000947
Target:  5'- gCGCCGUCCUCCCCCGCGGCCCCGACGc -3'
miRNA:   3'- -GCGGCAGGAGGGGGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 108051 0.83 0.051433
Target:  5'- cCGCCGUCCUCCCCCccgucCGGCCgaCGGCGa -3'
miRNA:   3'- -GCGGCAGGAGGGGGc----GCCGGg-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 81459 0.8 0.072016
Target:  5'- -cCCGUCCUCCCCCgGCGGUCCCG-Ca -3'
miRNA:   3'- gcGGCAGGAGGGGG-CGCCGGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 225308 0.8 0.079226
Target:  5'- gCGCCG-CCUCCUCCGCcGCCCCaGACGc -3'
miRNA:   3'- -GCGGCaGGAGGGGGCGcCGGGG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 5837 0.79 0.085082
Target:  5'- aCGCCcgacgaGUCgUCCCCgGCGGCCCCGuCGg -3'
miRNA:   3'- -GCGG------CAGgAGGGGgCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 28020 0.79 0.085082
Target:  5'- cCGCCGUCCUCggaCCGCaGGCCCCaGGCGa -3'
miRNA:   3'- -GCGGCAGGAGgg-GGCG-CCGGGG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 106751 0.79 0.089213
Target:  5'- cCGCCGcCCcgUCCCCCGggaCGGCCgCCGACGg -3'
miRNA:   3'- -GCGGCaGG--AGGGGGC---GCCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 65668 0.79 0.093534
Target:  5'- uGCCGaugcCCUUCCCgGCGGCCCCGAgGc -3'
miRNA:   3'- gCGGCa---GGAGGGGgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 223980 0.79 0.095768
Target:  5'- gGCCGUa-UCCCCCGCGcGCCCCGcCGu -3'
miRNA:   3'- gCGGCAggAGGGGGCGC-CGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 3162 0.79 0.095768
Target:  5'- cCGCCGUCgUCgCCCGCGGCCUcccgucgcuCGACGc -3'
miRNA:   3'- -GCGGCAGgAGgGGGCGCCGGG---------GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 218809 0.78 0.098053
Target:  5'- cCGCCGUCCgcuccgucucgCCCuCCGCGGCCCUGcucuGCGa -3'
miRNA:   3'- -GCGGCAGGa----------GGG-GGCGCCGGGGC----UGC- -5'
9131 3' -67.1 NC_002512.2 + 104731 0.78 0.100388
Target:  5'- -aCCGUCCgcccgCCCCCGgGGCCCCcGCGg -3'
miRNA:   3'- gcGGCAGGa----GGGGGCgCCGGGGcUGC- -5'
9131 3' -67.1 NC_002512.2 + 154117 0.78 0.102777
Target:  5'- -cCCGUCCUCCCgggcuCCGCGGUCuCCGACGc -3'
miRNA:   3'- gcGGCAGGAGGG-----GGCGCCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 155242 0.78 0.107715
Target:  5'- gGCCGUCCcgCCCgUCGCGGCgUCGACGg -3'
miRNA:   3'- gCGGCAGGa-GGG-GGCGCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 99740 0.77 0.118265
Target:  5'- cCGCCG-CCgggCCCCGCGGCCgCGACa -3'
miRNA:   3'- -GCGGCaGGag-GGGGCGCCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 9559 0.77 0.126802
Target:  5'- gGCCGUCCggcCCCCCGgagcccggccccCGGCCCCccGGCGg -3'
miRNA:   3'- gCGGCAGGa--GGGGGC------------GCCGGGG--CUGC- -5'
9131 3' -67.1 NC_002512.2 + 14747 0.76 0.135906
Target:  5'- uCGUCG-CCUCCCCCgucgcGCGGaCCCCGGCc -3'
miRNA:   3'- -GCGGCaGGAGGGGG-----CGCC-GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 137306 0.76 0.135906
Target:  5'- cCGCCGccCCUCCCggCCGCGGCgUCGGCGc -3'
miRNA:   3'- -GCGGCa-GGAGGG--GGCGCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 109098 0.76 0.135906
Target:  5'- cCGCCGUCCcgccgCCCCCGCcgacGGCCgCCGAg- -3'
miRNA:   3'- -GCGGCAGGa----GGGGGCG----CCGG-GGCUgc -5'
9131 3' -67.1 NC_002512.2 + 112982 0.76 0.135906
Target:  5'- aCGCCGUCCgaggagCCCgCCcCGGCCCCGcCGc -3'
miRNA:   3'- -GCGGCAGGa-----GGG-GGcGCCGGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.