miRNA display CGI


Results 1 - 20 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 7636 0.66 0.549609
Target:  5'- gGCCaUCaCgagaCCCgCCacggcgacgaaggacGCGGCCCCGACGg -3'
miRNA:   3'- gCGGcAG-Ga---GGG-GG---------------CGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 81383 0.66 0.546046
Target:  5'- gGCCGccUCCUCguCCCCGU--CCCCGGCc -3'
miRNA:   3'- gCGGC--AGGAG--GGGGCGccGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 101438 0.66 0.546046
Target:  5'- uCGCUGuUCCUgcugggccauggCCgCCCGCgaggagGGCUCCGGCGa -3'
miRNA:   3'- -GCGGC-AGGA------------GG-GGGCG------CCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 7475 0.66 0.554966
Target:  5'- gGCUG-CCggCCCCCGCcgaaGCCgCGGCGc -3'
miRNA:   3'- gCGGCaGGa-GGGGGCGc---CGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6694 0.66 0.535404
Target:  5'- aCGCCGUCC-CCgUCggGCGGCCCguccacguaccaGACGa -3'
miRNA:   3'- -GCGGCAGGaGGgGG--CGCCGGGg-----------CUGC- -5'
9131 3' -67.1 NC_002512.2 + 2180 0.66 0.540716
Target:  5'- gGaCCGUaCCgcgCCCCCGCcgccgucgucgucucGGUCgCCGGCGg -3'
miRNA:   3'- gC-GGCA-GGa--GGGGGCG---------------CCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 88888 0.66 0.546046
Target:  5'- uCGCCGUCCUUCgcgaUCGCGGUCCguuCGg -3'
miRNA:   3'- -GCGGCAGGAGGg---GGCGCCGGGgcuGC- -5'
9131 3' -67.1 NC_002512.2 + 132792 0.66 0.546046
Target:  5'- uGCCGUCg-CCCCCGCcGUCCUucCGg -3'
miRNA:   3'- gCGGCAGgaGGGGGCGcCGGGGcuGC- -5'
9131 3' -67.1 NC_002512.2 + 121361 0.66 0.545156
Target:  5'- cCGCCGUCgggUCCCCGgccggucgggcgcCGGgCCCGGCc -3'
miRNA:   3'- -GCGGCAGga-GGGGGC-------------GCCgGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 5991 0.66 0.554072
Target:  5'- gCGCCGcucccgcUCCUCCUCCuCGGCCUccuccuCGGCc -3'
miRNA:   3'- -GCGGC-------AGGAGGGGGcGCCGGG------GCUGc -5'
9131 3' -67.1 NC_002512.2 + 2229 0.66 0.537172
Target:  5'- cCGCCGcucuUCCUCCggaCCCGgGcGCUCCGuCGc -3'
miRNA:   3'- -GCGGC----AGGAGG---GGGCgC-CGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 99280 0.66 0.546046
Target:  5'- gCGCCGggcucuucgUCUCCUCCGCcuccgaGGCCgCGGCc -3'
miRNA:   3'- -GCGGCa--------GGAGGGGGCG------CCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 138012 0.66 0.546046
Target:  5'- cCGCCGcCCgcgCCggaCgGCGGCCUCGGgGg -3'
miRNA:   3'- -GCGGCaGGa--GGg--GgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 24382 0.66 0.546046
Target:  5'- aGUCGUCgUCCUCCGCGaCgCCGuCGu -3'
miRNA:   3'- gCGGCAGgAGGGGGCGCcGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 124091 0.66 0.536288
Target:  5'- cCGCCGUCUUCgCCCuCGCcGUCgaccaugCCGACGc -3'
miRNA:   3'- -GCGGCAGGAG-GGG-GCGcCGG-------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 18089 0.66 0.537172
Target:  5'- gCGCCGcggcgggaCggCCCCCGCGGCcaCCCGGg- -3'
miRNA:   3'- -GCGGCag------Ga-GGGGGCGCCG--GGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 128972 0.66 0.536288
Target:  5'- gGCCuGUCUUCCUaCCGCcgGGCCuucaccggacucgCCGACGg -3'
miRNA:   3'- gCGG-CAGGAGGG-GGCG--CCGG-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 10034 0.66 0.537172
Target:  5'- -cCCGUCCgcgauccgCCCCCGggcCGGaccCCCCGACc -3'
miRNA:   3'- gcGGCAGGa-------GGGGGC---GCC---GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 125256 0.66 0.537172
Target:  5'- gCGCCGcCCUCCCCCuCucCCCCGuCc -3'
miRNA:   3'- -GCGGCaGGAGGGGGcGccGGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 28810 0.66 0.536288
Target:  5'- uGCUGUCCcagaCCCCGCacaugugGGCCCgGuCGa -3'
miRNA:   3'- gCGGCAGGag--GGGGCG-------CCGGGgCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.