miRNA display CGI


Results 21 - 40 of 415 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 10034 0.66 0.537172
Target:  5'- -cCCGUCCgcgauccgCCCCCGggcCGGaccCCCCGACc -3'
miRNA:   3'- gcGGCAGGa-------GGGGGC---GCC---GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 132792 0.66 0.546046
Target:  5'- uGCCGUCg-CCCCCGCcGUCCUucCGg -3'
miRNA:   3'- gCGGCAGgaGGGGGCGcCGGGGcuGC- -5'
9131 3' -67.1 NC_002512.2 + 121361 0.66 0.545156
Target:  5'- cCGCCGUCgggUCCCCGgccggucgggcgcCGGgCCCGGCc -3'
miRNA:   3'- -GCGGCAGga-GGGGGC-------------GCCgGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 41201 0.66 0.563928
Target:  5'- cCGCCGugaUCgUCCCcgagaccgCCGCGGUCggaCGACGg -3'
miRNA:   3'- -GCGGC---AGgAGGG--------GGCGCCGGg--GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 7636 0.66 0.549609
Target:  5'- gGCCaUCaCgagaCCCgCCacggcgacgaaggacGCGGCCCCGACGg -3'
miRNA:   3'- gCGGcAG-Ga---GGG-GG---------------CGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 81383 0.66 0.546046
Target:  5'- gGCCGccUCCUCguCCCCGU--CCCCGGCc -3'
miRNA:   3'- gCGGC--AGGAG--GGGGCGccGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 44998 0.66 0.576538
Target:  5'- cCGCCGcCCgcugaCCCCGUGGCaguagcagcgcacgCUGACGg -3'
miRNA:   3'- -GCGGCaGGag---GGGGCGCCGg-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 125256 0.66 0.537172
Target:  5'- gCGCCGcCCUCCCCCuCucCCCCGuCc -3'
miRNA:   3'- -GCGGCaGGAGGGGGcGccGGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 80658 0.66 0.563928
Target:  5'- gCGCCGggUCCgUCggUCCCGCGGCggCGGCGa -3'
miRNA:   3'- -GCGGC--AGG-AG--GGGGCGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 24382 0.66 0.546046
Target:  5'- aGUCGUCgUCCUCCGCGaCgCCGuCGu -3'
miRNA:   3'- gCGGCAGgAGGGGGCGCcGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 30077 0.66 0.56303
Target:  5'- -cCCGaUCCgCCCCCGCGGuaaacaucccuguCCCgCGAUGg -3'
miRNA:   3'- gcGGC-AGGaGGGGGCGCC-------------GGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 98904 0.66 0.572929
Target:  5'- uCGCCcgaucUCCUCCUCCGaGGUcuCCCGAUa -3'
miRNA:   3'- -GCGGc----AGGAGGGGGCgCCG--GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 128972 0.66 0.536288
Target:  5'- gGCCuGUCUUCCUaCCGCcgGGCCuucaccggacucgCCGACGg -3'
miRNA:   3'- gCGG-CAGGAGGG-GGCG--CCGG-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 124091 0.66 0.536288
Target:  5'- cCGCCGUCUUCgCCCuCGCcGUCgaccaugCCGACGc -3'
miRNA:   3'- -GCGGCAGGAG-GGG-GCGcCGG-------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 106301 0.66 0.554966
Target:  5'- gCGgCGUCCUCUcagaCCCGCaGcGCCUuCGGCGg -3'
miRNA:   3'- -GCgGCAGGAGG----GGGCG-C-CGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 107557 0.66 0.563928
Target:  5'- aCGuuGUCCgUCCCCCGCcucagGGCCaCGuuCGc -3'
miRNA:   3'- -GCggCAGG-AGGGGGCG-----CCGGgGCu-GC- -5'
9131 3' -67.1 NC_002512.2 + 34529 0.66 0.572929
Target:  5'- aGCCGaCCagCaCCCGgGGuUCCCGGCGc -3'
miRNA:   3'- gCGGCaGGagG-GGGCgCC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 327 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 99280 0.66 0.546046
Target:  5'- gCGCCGggcucuucgUCUCCUCCGCcuccgaGGCCgCGGCc -3'
miRNA:   3'- -GCGGCa--------GGAGGGGGCG------CCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 138012 0.66 0.546046
Target:  5'- cCGCCGcCCgcgCCggaCgGCGGCCUCGGgGg -3'
miRNA:   3'- -GCGGCaGGa--GGg--GgCGCCGGGGCUgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.