miRNA display CGI


Results 21 - 40 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 18089 0.66 0.537172
Target:  5'- gCGCCGcggcgggaCggCCCCCGCGGCcaCCCGGg- -3'
miRNA:   3'- -GCGGCag------Ga-GGGGGCGCCG--GGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 98904 0.66 0.572929
Target:  5'- uCGCCcgaucUCCUCCUCCGaGGUcuCCCGAUa -3'
miRNA:   3'- -GCGGc----AGGAGGGGGCgCCG--GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 125256 0.66 0.537172
Target:  5'- gCGCCGcCCUCCCCCuCucCCCCGuCc -3'
miRNA:   3'- -GCGGCaGGAGGGGGcGccGGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 80658 0.66 0.563928
Target:  5'- gCGCCGggUCCgUCggUCCCGCGGCggCGGCGa -3'
miRNA:   3'- -GCGGC--AGG-AG--GGGGCGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 42685 0.66 0.572929
Target:  5'- -uCCGaUCC-CCaauCCCGCGGCgCCGGCa -3'
miRNA:   3'- gcGGC-AGGaGG---GGGCGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 5991 0.66 0.554072
Target:  5'- gCGCCGcucccgcUCCUCCUCCuCGGCCUccuccuCGGCc -3'
miRNA:   3'- -GCGGC-------AGGAGGGGGcGCCGGG------GCUGc -5'
9131 3' -67.1 NC_002512.2 + 81383 0.66 0.546046
Target:  5'- gGCCGccUCCUCguCCCCGU--CCCCGGCc -3'
miRNA:   3'- gCGGC--AGGAG--GGGGCGccGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 39458 0.66 0.554966
Target:  5'- gGUCGgugacggCCcgCUCCCGCaGcCCCCGGCGa -3'
miRNA:   3'- gCGGCa------GGa-GGGGGCGcC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 16981 0.66 0.563928
Target:  5'- uGCCGU--UCCUCC-CGGCgCCGACu -3'
miRNA:   3'- gCGGCAggAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 121361 0.66 0.545156
Target:  5'- cCGCCGUCgggUCCCCGgccggucgggcgcCGGgCCCGGCc -3'
miRNA:   3'- -GCGGCAGga-GGGGGC-------------GCCgGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 123939 0.66 0.56303
Target:  5'- gGCCGUCagaCUcgugccggcgggaCCCUCGgGGCUCUGGCGu -3'
miRNA:   3'- gCGGCAG---GA-------------GGGGGCgCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 138012 0.66 0.546046
Target:  5'- cCGCCGcCCgcgCCggaCgGCGGCCUCGGgGg -3'
miRNA:   3'- -GCGGCaGGa--GGg--GgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 99280 0.66 0.546046
Target:  5'- gCGCCGggcucuucgUCUCCUCCGCcuccgaGGCCgCGGCc -3'
miRNA:   3'- -GCGGCa--------GGAGGGGGCG------CCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 71213 0.66 0.563928
Target:  5'- gGCCGgCCaugaUCUCggcgaugaCCGUGGCCUCGACGu -3'
miRNA:   3'- gCGGCaGG----AGGG--------GGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 45908 0.66 0.581962
Target:  5'- gGCUGUCCg-CCCCGacaGGCgaCGACGc -3'
miRNA:   3'- gCGGCAGGagGGGGCg--CCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 100868 0.66 0.563928
Target:  5'- gGCCGguucgaaCUCCUCC-CGGCCCCaguGCGc -3'
miRNA:   3'- gCGGCag-----GAGGGGGcGCCGGGGc--UGC- -5'
9131 3' -67.1 NC_002512.2 + 106301 0.66 0.554966
Target:  5'- gCGgCGUCCUCUcagaCCCGCaGcGCCUuCGGCGg -3'
miRNA:   3'- -GCgGCAGGAGG----GGGCG-C-CGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 2229 0.66 0.537172
Target:  5'- cCGCCGcucuUCCUCCggaCCCGgGcGCUCCGuCGc -3'
miRNA:   3'- -GCGGC----AGGAGG---GGGCgC-CGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 128972 0.66 0.536288
Target:  5'- gGCCuGUCUUCCUaCCGCcgGGCCuucaccggacucgCCGACGg -3'
miRNA:   3'- gCGG-CAGGAGGG-GGCG--CCGG-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 101438 0.66 0.546046
Target:  5'- uCGCUGuUCCUgcugggccauggCCgCCCGCgaggagGGCUCCGGCGa -3'
miRNA:   3'- -GCGGC-AGGA------------GG-GGGCG------CCGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.