miRNA display CGI


Results 41 - 60 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 154974 0.66 0.581962
Target:  5'- cCGCC-UCCgggCCUCCGCGuccGUCgCGACGa -3'
miRNA:   3'- -GCGGcAGGa--GGGGGCGC---CGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 117098 0.66 0.591024
Target:  5'- gGCCGcCCUggaCCCgGCacagcggcacggGGCCCCGuCGg -3'
miRNA:   3'- gCGGCaGGAg--GGGgCG------------CCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 106301 0.66 0.554966
Target:  5'- gCGgCGUCCUCUcagaCCCGCaGcGCCUuCGGCGg -3'
miRNA:   3'- -GCgGCAGGAGG----GGGCG-C-CGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 138963 0.66 0.581962
Target:  5'- gGCCGcgCCggCCCCguuCGCGGCCgccaguCCGGCc -3'
miRNA:   3'- gCGGCa-GGa-GGGG---GCGCCGG------GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 98904 0.66 0.572929
Target:  5'- uCGCCcgaucUCCUCCUCCGaGGUcuCCCGAUa -3'
miRNA:   3'- -GCGGc----AGGAGGGGGCgCCG--GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 44998 0.66 0.576538
Target:  5'- cCGCCGcCCgcugaCCCCGUGGCaguagcagcgcacgCUGACGg -3'
miRNA:   3'- -GCGGCaGGag---GGGGCGCCGg-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 34529 0.66 0.572929
Target:  5'- aGCCGaCCagCaCCCGgGGuUCCCGGCGc -3'
miRNA:   3'- gCGGCaGGagG-GGGCgCC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 194644 0.66 0.581962
Target:  5'- uGcCCGUCCUCUUCUccgaucggGCGGUCCUGcACGc -3'
miRNA:   3'- gC-GGCAGGAGGGGG--------CGCCGGGGC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 6694 0.66 0.535404
Target:  5'- aCGCCGUCC-CCgUCggGCGGCCCguccacguaccaGACGa -3'
miRNA:   3'- -GCGGCAGGaGGgGG--CGCCGGGg-----------CUGC- -5'
9131 3' -67.1 NC_002512.2 + 28810 0.66 0.536288
Target:  5'- uGCUGUCCcagaCCCCGCacaugugGGCCCgGuCGa -3'
miRNA:   3'- gCGGCAGGag--GGGGCG-------CCGGGgCuGC- -5'
9131 3' -67.1 NC_002512.2 + 178336 0.66 0.581962
Target:  5'- gGCCGUCUcguacUCgCCCCGCaGUcuccggaucuccUCCGACGg -3'
miRNA:   3'- gCGGCAGG-----AG-GGGGCGcCG------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 80658 0.66 0.563928
Target:  5'- gCGCCGggUCCgUCggUCCCGCGGCggCGGCGa -3'
miRNA:   3'- -GCGGC--AGG-AG--GGGGCGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 192895 0.66 0.588303
Target:  5'- gCGCCGUCgCg-CUCCGCGGCgguccagagccgccUCCGAUGc -3'
miRNA:   3'- -GCGGCAG-GagGGGGCGCCG--------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 128972 0.66 0.536288
Target:  5'- gGCCuGUCUUCCUaCCGCcgGGCCuucaccggacucgCCGACGg -3'
miRNA:   3'- gCGG-CAGGAGGG-GGCG--CCGG-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 71213 0.66 0.563928
Target:  5'- gGCCGgCCaugaUCUCggcgaugaCCGUGGCCUCGACGu -3'
miRNA:   3'- gCGGCaGG----AGGG--------GGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6619 0.66 0.590117
Target:  5'- gCGgCGUCCcgCCCCCcgacgacGCGGaCgCCCGAgGa -3'
miRNA:   3'- -GCgGCAGGa-GGGGG-------CGCC-G-GGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 107557 0.66 0.563928
Target:  5'- aCGuuGUCCgUCCCCCGCcucagGGCCaCGuuCGc -3'
miRNA:   3'- -GCggCAGG-AGGGGGCG-----CCGGgGCu-GC- -5'
9131 3' -67.1 NC_002512.2 + 13661 0.66 0.591024
Target:  5'- uCGCCGcggcUCCagCUCCCGgacgaggcgaCGGCCgCGGCGg -3'
miRNA:   3'- -GCGGC----AGGa-GGGGGC----------GCCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 1377 0.66 0.591024
Target:  5'- -uCCGUCuCUCCUCCGCGucccucucGCCCCuccGCGu -3'
miRNA:   3'- gcGGCAG-GAGGGGGCGC--------CGGGGc--UGC- -5'
9131 3' -67.1 NC_002512.2 + 327 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.