miRNA display CGI


Results 41 - 60 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 154117 0.78 0.102777
Target:  5'- -cCCGUCCUCCCgggcuCCGCGGUCuCCGACGc -3'
miRNA:   3'- gcGGCAGGAGGG-----GGCGCCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 3162 0.79 0.095768
Target:  5'- cCGCCGUCgUCgCCCGCGGCCUcccgucgcuCGACGc -3'
miRNA:   3'- -GCGGCAGgAGgGGGCGCCGGG---------GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 65668 0.79 0.093534
Target:  5'- uGCCGaugcCCUUCCCgGCGGCCCCGAgGc -3'
miRNA:   3'- gCGGCa---GGAGGGGgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 28020 0.79 0.085082
Target:  5'- cCGCCGUCCUCggaCCGCaGGCCCCaGGCGa -3'
miRNA:   3'- -GCGGCAGGAGgg-GGCG-CCGGGG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 5837 0.79 0.085082
Target:  5'- aCGCCcgacgaGUCgUCCCCgGCGGCCCCGuCGg -3'
miRNA:   3'- -GCGG------CAGgAGGGGgCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 105563 0.75 0.170739
Target:  5'- aGCCGcagcaCgUCCgCCGCGGCCCCGAUc -3'
miRNA:   3'- gCGGCa----GgAGGgGGCGCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 7297 0.74 0.194863
Target:  5'- gGCCGgacaggCCUCCUCCGCgacggcgGGCCgCGGCGg -3'
miRNA:   3'- gCGGCa-----GGAGGGGGCG-------CCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 74283 0.73 0.232796
Target:  5'- gCGCCG-CacgUCCCCGUGGUCCuCGACGg -3'
miRNA:   3'- -GCGGCaGga-GGGGGCGCCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 98999 0.73 0.218069
Target:  5'- gGCCGgCCU-CUgCGCGGCCCCGAUa -3'
miRNA:   3'- gCGGCaGGAgGGgGCGCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 73364 0.73 0.21334
Target:  5'- cCGCCG-CCggaCCCCCGC-GCCCCGcCGc -3'
miRNA:   3'- -GCGGCaGGa--GGGGGCGcCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 81413 0.73 0.21334
Target:  5'- -cUCGUCCUCCCCgccguCGCGGCUCCGucccGCGg -3'
miRNA:   3'- gcGGCAGGAGGGG-----GCGCCGGGGC----UGC- -5'
9131 3' -67.1 NC_002512.2 + 6170 0.74 0.208699
Target:  5'- gGUCGUCCUCCCCgUGCGaGUCgCCGGCc -3'
miRNA:   3'- gCGGCAGGAGGGG-GCGC-CGG-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 122779 0.74 0.208699
Target:  5'- gGUCGU-CUCCCCCGagggcgccgGGCCCUGGCGg -3'
miRNA:   3'- gCGGCAgGAGGGGGCg--------CCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 134176 0.74 0.204146
Target:  5'- aGCCGUCUUCCCCuCcCGGCCCCc--- -3'
miRNA:   3'- gCGGCAGGAGGGG-GcGCCGGGGcugc -5'
9131 3' -67.1 NC_002512.2 + 5643 0.74 0.202797
Target:  5'- gCGCCGacccgCCUCCCCCGCucauuaaagaucugGaaaacGCCCCGGCGu -3'
miRNA:   3'- -GCGGCa----GGAGGGGGCG--------------C-----CGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6374 0.74 0.199679
Target:  5'- uGCCGUUCUCCgCCGUGGUCgucgCGACGg -3'
miRNA:   3'- gCGGCAGGAGGgGGCGCCGGg---GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 2932 0.74 0.199679
Target:  5'- aGCUucuuggCCUCCCgCGCGGCCuuGGCGa -3'
miRNA:   3'- gCGGca----GGAGGGgGCGCCGGggCUGC- -5'
9131 3' -67.1 NC_002512.2 + 1670 0.74 0.199679
Target:  5'- cCGCCGUCUcgCCCggccucgaCCGCGGCCUCGAa- -3'
miRNA:   3'- -GCGGCAGGa-GGG--------GGCGCCGGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 119145 0.74 0.199237
Target:  5'- aGCCGUCCuUCCgCCUGCacaacacGGCCCUGGCc -3'
miRNA:   3'- gCGGCAGG-AGG-GGGCG-------CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 98020 0.74 0.197039
Target:  5'- gGCCGUCCugaUCCgCCGCGGCgucaucucuagccugCCCGGCu -3'
miRNA:   3'- gCGGCAGG---AGGgGGCGCCG---------------GGGCUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.