miRNA display CGI


Results 41 - 60 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 192895 0.66 0.588303
Target:  5'- gCGCCGUCgCg-CUCCGCGGCgguccagagccgccUCCGAUGc -3'
miRNA:   3'- -GCGGCAG-GagGGGGCGCCG--------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 225435 0.66 0.537172
Target:  5'- gGCCGacgCCgaCCCCCGCG--CCCGGCa -3'
miRNA:   3'- gCGGCa--GGa-GGGGGCGCcgGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 227862 0.67 0.51958
Target:  5'- uGCUGUCgCUCCUCC-UGGUgCCGGCu -3'
miRNA:   3'- gCGGCAG-GAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 189412 0.67 0.520454
Target:  5'- cCGCCGUCUccgagacaagagggaCCCgCCGCcauGGCCaCCGACu -3'
miRNA:   3'- -GCGGCAGGa--------------GGG-GGCG---CCGG-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 145715 0.66 0.540716
Target:  5'- cCGCCGaaccuggaccgggaCCUCCCgCGCGGCCacgcgcucuCgGACGa -3'
miRNA:   3'- -GCGGCa-------------GGAGGGgGCGCCGG---------GgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 188668 0.66 0.572929
Target:  5'- cCGUCGUCCgaCCgCgGCGGUCUCGGgGa -3'
miRNA:   3'- -GCGGCAGGa-GGgGgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 125366 0.66 0.591024
Target:  5'- aGuCCGUggUCUCCUUCGCGGUCaCCgGACGc -3'
miRNA:   3'- gC-GGCA--GGAGGGGGCGCCGG-GG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 121625 0.66 0.591024
Target:  5'- uGUCGagCUCCCCgUGCGGCCUCa--- -3'
miRNA:   3'- gCGGCagGAGGGG-GCGCCGGGGcugc -5'
9131 3' -67.1 NC_002512.2 + 93669 0.66 0.563928
Target:  5'- aCGCUGaCC-CCCgCGCaccaGGCCgCCGGCGu -3'
miRNA:   3'- -GCGGCaGGaGGGgGCG----CCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 124834 0.66 0.554966
Target:  5'- aCGCCG-CCgUCgCCGagcgaGGCCCgCGACGa -3'
miRNA:   3'- -GCGGCaGGaGGgGGCg----CCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 167054 0.66 0.554966
Target:  5'- uCGCCG-CCUCCaucaCCaagauCGGCCgCGACa -3'
miRNA:   3'- -GCGGCaGGAGGg---GGc----GCCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 177909 0.66 0.567524
Target:  5'- uCGUCGUCCUUagcagcgucucgucgCUCgGCGGCUCCG-CGu -3'
miRNA:   3'- -GCGGCAGGAG---------------GGGgCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 138963 0.66 0.581962
Target:  5'- gGCCGcgCCggCCCCguuCGCGGCCgccaguCCGGCc -3'
miRNA:   3'- gCGGCa-GGa-GGGG---GCGCCGG------GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 167000 0.67 0.528349
Target:  5'- aCGCCuucuacggCUUCaCCggcgUCGCGGCCCCGAUGc -3'
miRNA:   3'- -GCGGca------GGAG-GG----GGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 99218 0.67 0.53099
Target:  5'- aGCCcgucccgGUCCUCggagagCCCCGCGcagaagucgagggacGCCCCGAgGa -3'
miRNA:   3'- gCGG-------CAGGAG------GGGGCGC---------------CGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 185445 0.66 0.546046
Target:  5'- gGCCGUCCUguccgCCCucugcuccuucgCCGUGGUCCUGcCGc -3'
miRNA:   3'- gCGGCAGGA-----GGG------------GGCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 166074 0.67 0.528349
Target:  5'- cCGUCGUCCUggacauguaCCCCGUGuGCUCCGcCa -3'
miRNA:   3'- -GCGGCAGGAg--------GGGGCGC-CGGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 98846 1.07 0.000947
Target:  5'- gCGCCGUCCUCCCCCGCGGCCCCGACGc -3'
miRNA:   3'- -GCGGCAGGAGGGGGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 214652 0.67 0.51958
Target:  5'- uCGCaGUCuCUCCuCCCG-GcGCCUCGGCGa -3'
miRNA:   3'- -GCGgCAG-GAGG-GGGCgC-CGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 195229 0.67 0.528349
Target:  5'- uGUCGUCg-CCCgCGauGUCCCGACGa -3'
miRNA:   3'- gCGGCAGgaGGGgGCgcCGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.