miRNA display CGI


Results 21 - 40 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 224327 0.66 0.591024
Target:  5'- uCGUCGUCUguUUUUCCGCGGCgCCG-CGc -3'
miRNA:   3'- -GCGGCAGG--AGGGGGCGCCGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 124834 0.66 0.554966
Target:  5'- aCGCCG-CCgUCgCCGagcgaGGCCCgCGACGa -3'
miRNA:   3'- -GCGGCaGGaGGgGGCg----CCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 158299 0.66 0.554966
Target:  5'- uGCCGgCC-CCCaaggCCGCGGUcgUCCGGCGc -3'
miRNA:   3'- gCGGCaGGaGGG----GGCGCCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 224964 0.66 0.563928
Target:  5'- cCGCCGUCUaCCCgCUggGCGGCggCGGCGg -3'
miRNA:   3'- -GCGGCAGGaGGG-GG--CGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 154974 0.66 0.581962
Target:  5'- cCGCC-UCCgggCCUCCGCGuccGUCgCGACGa -3'
miRNA:   3'- -GCGGcAGGa--GGGGGCGC---CGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 95859 0.66 0.546046
Target:  5'- gCGgCGUCCUCCCagggCCGCG-CgCCGAgGa -3'
miRNA:   3'- -GCgGCAGGAGGG----GGCGCcGgGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 170570 0.66 0.554966
Target:  5'- uCGCaGUUCUCCUCCGUcgccGuGUCCCGACc -3'
miRNA:   3'- -GCGgCAGGAGGGGGCG----C-CGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 178336 0.66 0.581962
Target:  5'- gGCCGUCUcguacUCgCCCCGCaGUcuccggaucuccUCCGACGg -3'
miRNA:   3'- gCGGCAGG-----AG-GGGGCGcCG------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 206983 0.66 0.563928
Target:  5'- aGCCGcCCgggaUgCCCGUGGCCCgCGGgGu -3'
miRNA:   3'- gCGGCaGGa---GgGGGCGCCGGG-GCUgC- -5'
9131 3' -67.1 NC_002512.2 + 155711 0.66 0.563928
Target:  5'- uGCCGgcgCCUCCaCCUggaucccgaGCGGaCCCuCGGCu -3'
miRNA:   3'- gCGGCa--GGAGG-GGG---------CGCC-GGG-GCUGc -5'
9131 3' -67.1 NC_002512.2 + 192895 0.66 0.588303
Target:  5'- gCGCCGUCgCg-CUCCGCGGCgguccagagccgccUCCGAUGc -3'
miRNA:   3'- -GCGGCAG-GagGGGGCGCCG--------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 125366 0.66 0.591024
Target:  5'- aGuCCGUggUCUCCUUCGCGGUCaCCgGACGc -3'
miRNA:   3'- gC-GGCA--GGAGGGGGCGCCGG-GG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 225435 0.66 0.537172
Target:  5'- gGCCGacgCCgaCCCCCGCG--CCCGGCa -3'
miRNA:   3'- gCGGCa--GGa-GGGGGCGCcgGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 145715 0.66 0.540716
Target:  5'- cCGCCGaaccuggaccgggaCCUCCCgCGCGGCCacgcgcucuCgGACGa -3'
miRNA:   3'- -GCGGCa-------------GGAGGGgGCGCCGG---------GgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 167054 0.66 0.554966
Target:  5'- uCGCCG-CCUCCaucaCCaagauCGGCCgCGACa -3'
miRNA:   3'- -GCGGCaGGAGGg---GGc----GCCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 188668 0.66 0.572929
Target:  5'- cCGUCGUCCgaCCgCgGCGGUCUCGGgGa -3'
miRNA:   3'- -GCGGCAGGa-GGgGgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 150011 0.66 0.581962
Target:  5'- aCGCCGgggcucucuUCCUCCUCCGaggacgagggGGCCggggaCGACGg -3'
miRNA:   3'- -GCGGC---------AGGAGGGGGCg---------CCGGg----GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 121625 0.66 0.591024
Target:  5'- uGUCGagCUCCCCgUGCGGCCUCa--- -3'
miRNA:   3'- gCGGCagGAGGGG-GCGCCGGGGcugc -5'
9131 3' -67.1 NC_002512.2 + 93669 0.66 0.563928
Target:  5'- aCGCUGaCC-CCCgCGCaccaGGCCgCCGGCGu -3'
miRNA:   3'- -GCGGCaGGaGGGgGCG----CCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 118358 0.66 0.563928
Target:  5'- uGCCG-CUUCCUgCaggaGGCCCUGACGc -3'
miRNA:   3'- gCGGCaGGAGGGgGcg--CCGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.