miRNA display CGI


Results 1 - 20 of 415 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 224327 0.66 0.591024
Target:  5'- uCGUCGUCUguUUUUCCGCGGCgCCG-CGc -3'
miRNA:   3'- -GCGGCAGG--AGGGGGCGCCGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 99630 0.66 0.572929
Target:  5'- gGUCGUCg-CCCUCGgaGGgCCCGGCGc -3'
miRNA:   3'- gCGGCAGgaGGGGGCg-CCgGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 177909 0.66 0.567524
Target:  5'- uCGUCGUCCUUagcagcgucucgucgCUCgGCGGCUCCG-CGu -3'
miRNA:   3'- -GCGGCAGGAG---------------GGGgCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 98846 1.07 0.000947
Target:  5'- gCGCCGUCCUCCCCCGCGGCCCCGACGc -3'
miRNA:   3'- -GCGGCAGGAGGGGGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 121625 0.66 0.591024
Target:  5'- uGUCGagCUCCCCgUGCGGCCUCa--- -3'
miRNA:   3'- gCGGCagGAGGGG-GCGCCGGGGcugc -5'
9131 3' -67.1 NC_002512.2 + 125366 0.66 0.591024
Target:  5'- aGuCCGUggUCUCCUUCGCGGUCaCCgGACGc -3'
miRNA:   3'- gC-GGCA--GGAGGGGGCGCCGG-GG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 187311 0.66 0.581962
Target:  5'- cCGCCG--CUCgCCUCGCGGCgCCCGcCc -3'
miRNA:   3'- -GCGGCagGAG-GGGGCGCCG-GGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 178336 0.66 0.581962
Target:  5'- gGCCGUCUcguacUCgCCCCGCaGUcuccggaucuccUCCGACGg -3'
miRNA:   3'- gCGGCAGG-----AG-GGGGCGcCG------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 194644 0.66 0.581962
Target:  5'- uGcCCGUCCUCUUCUccgaucggGCGGUCCUGcACGc -3'
miRNA:   3'- gC-GGCAGGAGGGGG--------CGCCGGGGC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 207582 0.66 0.572929
Target:  5'- gCGCUccCCUCUCCC-UGGCCUgCGACGg -3'
miRNA:   3'- -GCGGcaGGAGGGGGcGCCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 150011 0.66 0.581962
Target:  5'- aCGCCGgggcucucuUCCUCCUCCGaggacgagggGGCCggggaCGACGg -3'
miRNA:   3'- -GCGGC---------AGGAGGGGGCg---------CCGGg----GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 202026 0.66 0.581962
Target:  5'- gGCCGgg-UCCCCCGcCGGUCCgGcucGCGg -3'
miRNA:   3'- gCGGCaggAGGGGGC-GCCGGGgC---UGC- -5'
9131 3' -67.1 NC_002512.2 + 192149 0.66 0.591024
Target:  5'- gCGCgGgCCagaUCCCGCGGCCCCuGCc -3'
miRNA:   3'- -GCGgCaGGag-GGGGCGCCGGGGcUGc -5'
9131 3' -67.1 NC_002512.2 + 194313 0.66 0.572929
Target:  5'- gGUCa-CCUUCCUCGUGGCCCgGgACGg -3'
miRNA:   3'- gCGGcaGGAGGGGGCGCCGGGgC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 117098 0.66 0.591024
Target:  5'- gGCCGcCCUggaCCCgGCacagcggcacggGGCCCCGuCGg -3'
miRNA:   3'- gCGGCaGGAg--GGGgCG------------CCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 138963 0.66 0.581962
Target:  5'- gGCCGcgCCggCCCCguuCGCGGCCgccaguCCGGCc -3'
miRNA:   3'- gCGGCa-GGa-GGGG---GCGCCGG------GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 188668 0.66 0.572929
Target:  5'- cCGUCGUCCgaCCgCgGCGGUCUCGGgGa -3'
miRNA:   3'- -GCGGCAGGa-GGgGgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 197678 0.66 0.572027
Target:  5'- aCGCCcUCCUCaacggacaCCCGCccugccugcccauGGCCCgCGACc -3'
miRNA:   3'- -GCGGcAGGAGg-------GGGCG-------------CCGGG-GCUGc -5'
9131 3' -67.1 NC_002512.2 + 141780 0.66 0.591024
Target:  5'- uGaCCGUgaUCagCCCCGCGGUgUCGGCGa -3'
miRNA:   3'- gC-GGCA--GGagGGGGCGCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 192895 0.66 0.588303
Target:  5'- gCGCCGUCgCg-CUCCGCGGCgguccagagccgccUCCGAUGc -3'
miRNA:   3'- -GCGGCAG-GagGGGGCGCCG--------------GGGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.