miRNA display CGI


Results 21 - 40 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 114168 0.76 0.145607
Target:  5'- gGCCcgGUCCUCCUCgGUGGCgCCGGCGu -3'
miRNA:   3'- gCGG--CAGGAGGGGgCGCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 106727 0.76 0.145607
Target:  5'- gCGCUccuGUCCgCCUCCuCGGCCCCGGCGg -3'
miRNA:   3'- -GCGG---CAGGaGGGGGcGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 129832 0.76 0.148979
Target:  5'- gCGCCG-CCgCCCCCGCGucucaGCgCCCGGCGg -3'
miRNA:   3'- -GCGGCaGGaGGGGGCGC-----CG-GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 137222 0.76 0.152422
Target:  5'- aGCCGgaUCUCUCCC-CGGUCCCGACGa -3'
miRNA:   3'- gCGGCa-GGAGGGGGcGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 222600 0.76 0.152422
Target:  5'- gGCCuGUCCggCCCCCGgGGCcucgcgcccgauCCCGACGg -3'
miRNA:   3'- gCGG-CAGGa-GGGGGCgCCG------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 142016 0.75 0.159525
Target:  5'- gGCCGU-CUCUUCCGCGGCCgggggCCGGCGa -3'
miRNA:   3'- gCGGCAgGAGGGGGCGCCGG-----GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 185400 0.75 0.163187
Target:  5'- gGCCGUCUUCUCCgCcCGGCCCCGGgGc -3'
miRNA:   3'- gCGGCAGGAGGGG-GcGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 133664 0.75 0.163187
Target:  5'- uCGCCG-CCgCCgCCGCGGCCgCCGugGc -3'
miRNA:   3'- -GCGGCaGGaGGgGGCGCCGG-GGCugC- -5'
9131 3' -67.1 NC_002512.2 + 105563 0.75 0.170739
Target:  5'- aGCCGcagcaCgUCCgCCGCGGCCCCGAUc -3'
miRNA:   3'- gCGGCa----GgAGGgGGCGCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 10570 0.75 0.170739
Target:  5'- aCGCCGaCgCUCuCCCCGUGGCCgCgGACGa -3'
miRNA:   3'- -GCGGCaG-GAG-GGGGCGCCGG-GgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 148084 0.74 0.182654
Target:  5'- gGUCGUCCgUCCCCCgGCGGCggCGGCGg -3'
miRNA:   3'- gCGGCAGG-AGGGGG-CGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 205626 0.74 0.188461
Target:  5'- cCGCCGUCCUUCCugcccgcgggggacgCCGuCGGCgggCCCGACGc -3'
miRNA:   3'- -GCGGCAGGAGGG---------------GGC-GCCG---GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 154948 0.74 0.191
Target:  5'- -cCCGUCgCUCUCCCGCGGUCCgCGAUc -3'
miRNA:   3'- gcGGCAG-GAGGGGGCGCCGGG-GCUGc -5'
9131 3' -67.1 NC_002512.2 + 7297 0.74 0.194863
Target:  5'- gGCCGgacaggCCUCCUCCGCgacggcgGGCCgCGGCGg -3'
miRNA:   3'- gCGGCa-----GGAGGGGGCG-------CCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 98020 0.74 0.197039
Target:  5'- gGCCGUCCugaUCCgCCGCGGCgucaucucuagccugCCCGGCu -3'
miRNA:   3'- gCGGCAGG---AGGgGGCGCCG---------------GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 119145 0.74 0.199237
Target:  5'- aGCCGUCCuUCCgCCUGCacaacacGGCCCUGGCc -3'
miRNA:   3'- gCGGCAGG-AGG-GGGCG-------CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 6374 0.74 0.199679
Target:  5'- uGCCGUUCUCCgCCGUGGUCgucgCGACGg -3'
miRNA:   3'- gCGGCAGGAGGgGGCGCCGGg---GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 2932 0.74 0.199679
Target:  5'- aGCUucuuggCCUCCCgCGCGGCCuuGGCGa -3'
miRNA:   3'- gCGGca----GGAGGGgGCGCCGGggCUGC- -5'
9131 3' -67.1 NC_002512.2 + 1670 0.74 0.199679
Target:  5'- cCGCCGUCUcgCCCggccucgaCCGCGGCCUCGAa- -3'
miRNA:   3'- -GCGGCAGGa-GGG--------GGCGCCGGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 5643 0.74 0.202797
Target:  5'- gCGCCGacccgCCUCCCCCGCucauuaaagaucugGaaaacGCCCCGGCGu -3'
miRNA:   3'- -GCGGCa----GGAGGGGGCG--------------C-----CGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.