miRNA display CGI


Results 21 - 40 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 178336 0.66 0.581962
Target:  5'- gGCCGUCUcguacUCgCCCCGCaGUcuccggaucuccUCCGACGg -3'
miRNA:   3'- gCGGCAGG-----AG-GGGGCGcCG------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 187311 0.66 0.581962
Target:  5'- cCGCCG--CUCgCCUCGCGGCgCCCGcCc -3'
miRNA:   3'- -GCGGCagGAG-GGGGCGCCG-GGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 44998 0.66 0.576538
Target:  5'- cCGCCGcCCgcugaCCCCGUGGCaguagcagcgcacgCUGACGg -3'
miRNA:   3'- -GCGGCaGGag---GGGGCGCCGg-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 207582 0.66 0.572929
Target:  5'- gCGCUccCCUCUCCC-UGGCCUgCGACGg -3'
miRNA:   3'- -GCGGcaGGAGGGGGcGCCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 42685 0.66 0.572929
Target:  5'- -uCCGaUCC-CCaauCCCGCGGCgCCGGCa -3'
miRNA:   3'- gcGGC-AGGaGG---GGGCGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 98904 0.66 0.572929
Target:  5'- uCGCCcgaucUCCUCCUCCGaGGUcuCCCGAUa -3'
miRNA:   3'- -GCGGc----AGGAGGGGGCgCCG--GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 18544 0.66 0.572929
Target:  5'- gGCCGcgcgCgUCCCCCaGCgcccgGGCCCgGACc -3'
miRNA:   3'- gCGGCa---GgAGGGGG-CG-----CCGGGgCUGc -5'
9131 3' -67.1 NC_002512.2 + 188668 0.66 0.572929
Target:  5'- cCGUCGUCCgaCCgCgGCGGUCUCGGgGa -3'
miRNA:   3'- -GCGGCAGGa-GGgGgCGCCGGGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 194313 0.66 0.572929
Target:  5'- gGUCa-CCUUCCUCGUGGCCCgGgACGg -3'
miRNA:   3'- gCGGcaGGAGGGGGCGCCGGGgC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 34529 0.66 0.572929
Target:  5'- aGCCGaCCagCaCCCGgGGuUCCCGGCGc -3'
miRNA:   3'- gCGGCaGGagG-GGGCgCC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 99630 0.66 0.572929
Target:  5'- gGUCGUCg-CCCUCGgaGGgCCCGGCGc -3'
miRNA:   3'- gCGGCAGgaGGGGGCg-CCgGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 197678 0.66 0.572027
Target:  5'- aCGCCcUCCUCaacggacaCCCGCccugccugcccauGGCCCgCGACc -3'
miRNA:   3'- -GCGGcAGGAGg-------GGGCG-------------CCGGG-GCUGc -5'
9131 3' -67.1 NC_002512.2 + 177909 0.66 0.567524
Target:  5'- uCGUCGUCCUUagcagcgucucgucgCUCgGCGGCUCCG-CGu -3'
miRNA:   3'- -GCGGCAGGAG---------------GGGgCGCCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 107557 0.66 0.563928
Target:  5'- aCGuuGUCCgUCCCCCGCcucagGGCCaCGuuCGc -3'
miRNA:   3'- -GCggCAGG-AGGGGGCG-----CCGGgGCu-GC- -5'
9131 3' -67.1 NC_002512.2 + 327 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 41201 0.66 0.563928
Target:  5'- cCGCCGugaUCgUCCCcgagaccgCCGCGGUCggaCGACGg -3'
miRNA:   3'- -GCGGC---AGgAGGG--------GGCGCCGGg--GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 229730 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 71213 0.66 0.563928
Target:  5'- gGCCGgCCaugaUCUCggcgaugaCCGUGGCCUCGACGu -3'
miRNA:   3'- gCGGCaGG----AGGG--------GGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 100868 0.66 0.563928
Target:  5'- gGCCGguucgaaCUCCUCC-CGGCCCCaguGCGc -3'
miRNA:   3'- gCGGCag-----GAGGGGGcGCCGGGGc--UGC- -5'
9131 3' -67.1 NC_002512.2 + 16981 0.66 0.563928
Target:  5'- uGCCGU--UCCUCC-CGGCgCCGACu -3'
miRNA:   3'- gCGGCAggAGGGGGcGCCGgGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.