miRNA display CGI


Results 41 - 60 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 71213 0.66 0.563928
Target:  5'- gGCCGgCCaugaUCUCggcgaugaCCGUGGCCUCGACGu -3'
miRNA:   3'- gCGGCaGG----AGGG--------GGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 100868 0.66 0.563928
Target:  5'- gGCCGguucgaaCUCCUCC-CGGCCCCaguGCGc -3'
miRNA:   3'- gCGGCag-----GAGGGGGcGCCGGGGc--UGC- -5'
9131 3' -67.1 NC_002512.2 + 16981 0.66 0.563928
Target:  5'- uGCCGU--UCCUCC-CGGCgCCGACu -3'
miRNA:   3'- gCGGCAggAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 41201 0.66 0.563928
Target:  5'- cCGCCGugaUCgUCCCcgagaccgCCGCGGUCggaCGACGg -3'
miRNA:   3'- -GCGGC---AGgAGGG--------GGCGCCGGg--GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 327 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 229730 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 206983 0.66 0.563928
Target:  5'- aGCCGcCCgggaUgCCCGUGGCCCgCGGgGu -3'
miRNA:   3'- gCGGCaGGa---GgGGGCGCCGGG-GCUgC- -5'
9131 3' -67.1 NC_002512.2 + 115114 0.66 0.56303
Target:  5'- aCGCCGUgCC-CCgucgcgaCCCGCGGCaCCUGGa- -3'
miRNA:   3'- -GCGGCA-GGaGG-------GGGCGCCG-GGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 30077 0.66 0.56303
Target:  5'- -cCCGaUCCgCCCCCGCGGuaaacaucccuguCCCgCGAUGg -3'
miRNA:   3'- gcGGC-AGGaGGGGGCGCC-------------GGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 123939 0.66 0.56303
Target:  5'- gGCCGUCagaCUcgugccggcgggaCCCUCGgGGCUCUGGCGu -3'
miRNA:   3'- gCGGCAG---GA-------------GGGGGCgCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 140958 0.66 0.560339
Target:  5'- gCGCCGcUUCUCCCCCGaacugcauguccGCuCCCGaACGg -3'
miRNA:   3'- -GCGGC-AGGAGGGGGCgc----------CG-GGGC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 106301 0.66 0.554966
Target:  5'- gCGgCGUCCUCUcagaCCCGCaGcGCCUuCGGCGg -3'
miRNA:   3'- -GCgGCAGGAGG----GGGCG-C-CGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 108002 0.66 0.554966
Target:  5'- uCGCCGagCgUCCCCCGCGaccuCCCCcuCGg -3'
miRNA:   3'- -GCGGCa-GgAGGGGGCGCc---GGGGcuGC- -5'
9131 3' -67.1 NC_002512.2 + 39458 0.66 0.554966
Target:  5'- gGUCGgugacggCCcgCUCCCGCaGcCCCCGGCGa -3'
miRNA:   3'- gCGGCa------GGa-GGGGGCGcC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 7475 0.66 0.554966
Target:  5'- gGCUG-CCggCCCCCGCcgaaGCCgCGGCGc -3'
miRNA:   3'- gCGGCaGGa-GGGGGCGc---CGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 124834 0.66 0.554966
Target:  5'- aCGCCG-CCgUCgCCGagcgaGGCCCgCGACGa -3'
miRNA:   3'- -GCGGCaGGaGGgGGCg----CCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 158299 0.66 0.554966
Target:  5'- uGCCGgCC-CCCaaggCCGCGGUcgUCCGGCGc -3'
miRNA:   3'- gCGGCaGGaGGG----GGCGCCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 167054 0.66 0.554966
Target:  5'- uCGCCG-CCUCCaucaCCaagauCGGCCgCGACa -3'
miRNA:   3'- -GCGGCaGGAGGg---GGc----GCCGGgGCUGc -5'
9131 3' -67.1 NC_002512.2 + 226795 0.66 0.554966
Target:  5'- aCGCCGUggucucggCCgCCgCCGUGGCCgCCGcCGc -3'
miRNA:   3'- -GCGGCA--------GGaGGgGGCGCCGG-GGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 75469 0.66 0.554966
Target:  5'- aCGCCGccaucuugCCUCggaCCCCGaucGCCuCCGACGg -3'
miRNA:   3'- -GCGGCa-------GGAG---GGGGCgc-CGG-GGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.