Results 61 - 80 of 415 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 189412 | 0.67 | 0.520454 |
Target: 5'- cCGCCGUCUccgagacaagagggaCCCgCCGCcauGGCCaCCGACu -3' miRNA: 3'- -GCGGCAGGa--------------GGG-GGCG---CCGG-GGCUGc -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 194313 | 0.66 | 0.572929 |
Target: 5'- gGUCa-CCUUCCUCGUGGCCCgGgACGg -3' miRNA: 3'- gCGGcaGGAGGGGGCGCCGGGgC-UGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 95859 | 0.66 | 0.546046 |
Target: 5'- gCGgCGUCCUCCCagggCCGCG-CgCCGAgGa -3' miRNA: 3'- -GCgGCAGGAGGG----GGCGCcGgGGCUgC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 189778 | 0.66 | 0.537172 |
Target: 5'- -uCCGUCCUCCCgCCGUacgaGGCUCUGuCu -3' miRNA: 3'- gcGGCAGGAGGG-GGCG----CCGGGGCuGc -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 184404 | 0.66 | 0.535404 |
Target: 5'- cCGCCGgggggcgcucggCCUUCUCCGUcGCCUCGGCc -3' miRNA: 3'- -GCGGCa-----------GGAGGGGGCGcCGGGGCUGc -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 202026 | 0.66 | 0.581962 |
Target: 5'- gGCCGgg-UCCCCCGcCGGUCCgGcucGCGg -3' miRNA: 3'- gCGGCaggAGGGGGC-GCCGGGgC---UGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 224964 | 0.66 | 0.563928 |
Target: 5'- cCGCCGUCUaCCCgCUggGCGGCggCGGCGg -3' miRNA: 3'- -GCGGCAGGaGGG-GG--CGCCGggGCUGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 158299 | 0.66 | 0.554966 |
Target: 5'- uGCCGgCC-CCCaaggCCGCGGUcgUCCGGCGc -3' miRNA: 3'- gCGGCaGGaGGG----GGCGCCG--GGGCUGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 108002 | 0.66 | 0.554966 |
Target: 5'- uCGCCGagCgUCCCCCGCGaccuCCCCcuCGg -3' miRNA: 3'- -GCGGCa-GgAGGGGGCGCc---GGGGcuGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 155711 | 0.66 | 0.563928 |
Target: 5'- uGCCGgcgCCUCCaCCUggaucccgaGCGGaCCCuCGGCu -3' miRNA: 3'- gCGGCa--GGAGG-GGG---------CGCC-GGG-GCUGc -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 125366 | 0.66 | 0.591024 |
Target: 5'- aGuCCGUggUCUCCUUCGCGGUCaCCgGACGc -3' miRNA: 3'- gC-GGCA--GGAGGGGGCGCCGG-GG-CUGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 192895 | 0.66 | 0.588303 |
Target: 5'- gCGCCGUCgCg-CUCCGCGGCgguccagagccgccUCCGAUGc -3' miRNA: 3'- -GCGGCAG-GagGGGGCGCCG--------------GGGCUGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 227862 | 0.67 | 0.51958 |
Target: 5'- uGCUGUCgCUCCUCC-UGGUgCCGGCu -3' miRNA: 3'- gCGGCAG-GAGGGGGcGCCGgGGCUGc -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 81942 | 0.67 | 0.510869 |
Target: 5'- aGCgaGgCCUCgUCgGCGGCCgCCGACGa -3' miRNA: 3'- gCGg-CaGGAGgGGgCGCCGG-GGCUGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 166439 | 0.67 | 0.485116 |
Target: 5'- cCGCCGUCCUCCgggggCGaCGGCgCCgGGCu -3' miRNA: 3'- -GCGGCAGGAGGgg---GC-GCCG-GGgCUGc -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 199602 | 0.67 | 0.485116 |
Target: 5'- aCGCgGgggCCUCCUCCaUGGCgCCGGCu -3' miRNA: 3'- -GCGgCa--GGAGGGGGcGCCGgGGCUGc -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 223559 | 0.67 | 0.502219 |
Target: 5'- gCGCCcggUC-CCCCCGCGGgcggcggccaCCUCGACGu -3' miRNA: 3'- -GCGGca-GGaGGGGGCGCC----------GGGGCUGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 197297 | 0.67 | 0.523081 |
Target: 5'- aGCC-UCUuuaauuUCCgacacgaccccggcaCCCGCGGCgCCCGGCGg -3' miRNA: 3'- gCGGcAGG------AGG---------------GGGCGCCG-GGGCUGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 132496 | 0.67 | 0.51958 |
Target: 5'- gCGUCGUCgCgcccgCCCCCGUcuccGGCCgCCG-CGg -3' miRNA: 3'- -GCGGCAG-Ga----GGGGGCG----CCGG-GGCuGC- -5' |
|||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 87836 | 0.67 | 0.51958 |
Target: 5'- gGCCGggcgUCgggCCCUCGCGGCgggucgccggccCCCGGCc -3' miRNA: 3'- gCGGCa---GGa--GGGGGCGCCG------------GGGCUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home