miRNA display CGI


Results 61 - 80 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 189412 0.67 0.520454
Target:  5'- cCGCCGUCUccgagacaagagggaCCCgCCGCcauGGCCaCCGACu -3'
miRNA:   3'- -GCGGCAGGa--------------GGG-GGCG---CCGG-GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 194313 0.66 0.572929
Target:  5'- gGUCa-CCUUCCUCGUGGCCCgGgACGg -3'
miRNA:   3'- gCGGcaGGAGGGGGCGCCGGGgC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 95859 0.66 0.546046
Target:  5'- gCGgCGUCCUCCCagggCCGCG-CgCCGAgGa -3'
miRNA:   3'- -GCgGCAGGAGGG----GGCGCcGgGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 189778 0.66 0.537172
Target:  5'- -uCCGUCCUCCCgCCGUacgaGGCUCUGuCu -3'
miRNA:   3'- gcGGCAGGAGGG-GGCG----CCGGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 184404 0.66 0.535404
Target:  5'- cCGCCGgggggcgcucggCCUUCUCCGUcGCCUCGGCc -3'
miRNA:   3'- -GCGGCa-----------GGAGGGGGCGcCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 202026 0.66 0.581962
Target:  5'- gGCCGgg-UCCCCCGcCGGUCCgGcucGCGg -3'
miRNA:   3'- gCGGCaggAGGGGGC-GCCGGGgC---UGC- -5'
9131 3' -67.1 NC_002512.2 + 224964 0.66 0.563928
Target:  5'- cCGCCGUCUaCCCgCUggGCGGCggCGGCGg -3'
miRNA:   3'- -GCGGCAGGaGGG-GG--CGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 158299 0.66 0.554966
Target:  5'- uGCCGgCC-CCCaaggCCGCGGUcgUCCGGCGc -3'
miRNA:   3'- gCGGCaGGaGGG----GGCGCCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 108002 0.66 0.554966
Target:  5'- uCGCCGagCgUCCCCCGCGaccuCCCCcuCGg -3'
miRNA:   3'- -GCGGCa-GgAGGGGGCGCc---GGGGcuGC- -5'
9131 3' -67.1 NC_002512.2 + 155711 0.66 0.563928
Target:  5'- uGCCGgcgCCUCCaCCUggaucccgaGCGGaCCCuCGGCu -3'
miRNA:   3'- gCGGCa--GGAGG-GGG---------CGCC-GGG-GCUGc -5'
9131 3' -67.1 NC_002512.2 + 125366 0.66 0.591024
Target:  5'- aGuCCGUggUCUCCUUCGCGGUCaCCgGACGc -3'
miRNA:   3'- gC-GGCA--GGAGGGGGCGCCGG-GG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 192895 0.66 0.588303
Target:  5'- gCGCCGUCgCg-CUCCGCGGCgguccagagccgccUCCGAUGc -3'
miRNA:   3'- -GCGGCAG-GagGGGGCGCCG--------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 227862 0.67 0.51958
Target:  5'- uGCUGUCgCUCCUCC-UGGUgCCGGCu -3'
miRNA:   3'- gCGGCAG-GAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 81942 0.67 0.510869
Target:  5'- aGCgaGgCCUCgUCgGCGGCCgCCGACGa -3'
miRNA:   3'- gCGg-CaGGAGgGGgCGCCGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 166439 0.67 0.485116
Target:  5'- cCGCCGUCCUCCgggggCGaCGGCgCCgGGCu -3'
miRNA:   3'- -GCGGCAGGAGGgg---GC-GCCG-GGgCUGc -5'
9131 3' -67.1 NC_002512.2 + 199602 0.67 0.485116
Target:  5'- aCGCgGgggCCUCCUCCaUGGCgCCGGCu -3'
miRNA:   3'- -GCGgCa--GGAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 223559 0.67 0.502219
Target:  5'- gCGCCcggUC-CCCCCGCGGgcggcggccaCCUCGACGu -3'
miRNA:   3'- -GCGGca-GGaGGGGGCGCC----------GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 197297 0.67 0.523081
Target:  5'- aGCC-UCUuuaauuUCCgacacgaccccggcaCCCGCGGCgCCCGGCGg -3'
miRNA:   3'- gCGGcAGG------AGG---------------GGGCGCCG-GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 132496 0.67 0.51958
Target:  5'- gCGUCGUCgCgcccgCCCCCGUcuccGGCCgCCG-CGg -3'
miRNA:   3'- -GCGGCAG-Ga----GGGGGCG----CCGG-GGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 87836 0.67 0.51958
Target:  5'- gGCCGggcgUCgggCCCUCGCGGCgggucgccggccCCCGGCc -3'
miRNA:   3'- gCGGCa---GGa--GGGGGCGCCG------------GGGCUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.