miRNA display CGI


Results 61 - 80 of 415 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 10034 0.66 0.537172
Target:  5'- -cCCGUCCgcgauccgCCCCCGggcCGGaccCCCCGACc -3'
miRNA:   3'- gcGGCAGGa-------GGGGGC---GCC---GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 107557 0.66 0.563928
Target:  5'- aCGuuGUCCgUCCCCCGCcucagGGCCaCGuuCGc -3'
miRNA:   3'- -GCggCAGG-AGGGGGCG-----CCGGgGCu-GC- -5'
9131 3' -67.1 NC_002512.2 + 229730 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 41201 0.66 0.563928
Target:  5'- cCGCCGugaUCgUCCCcgagaccgCCGCGGUCggaCGACGg -3'
miRNA:   3'- -GCGGC---AGgAGGG--------GGCGCCGGg--GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 71213 0.66 0.563928
Target:  5'- gGCCGgCCaugaUCUCggcgaugaCCGUGGCCUCGACGu -3'
miRNA:   3'- gCGGCaGG----AGGG--------GGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 75469 0.66 0.554966
Target:  5'- aCGCCGccaucuugCCUCggaCCCCGaucGCCuCCGACGg -3'
miRNA:   3'- -GCGGCa-------GGAG---GGGGCgc-CGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 80658 0.66 0.563928
Target:  5'- gCGCCGggUCCgUCggUCCCGCGGCggCGGCGa -3'
miRNA:   3'- -GCGGC--AGG-AG--GGGGCGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 16981 0.66 0.563928
Target:  5'- uGCCGU--UCCUCC-CGGCgCCGACu -3'
miRNA:   3'- gCGGCAggAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 100868 0.66 0.563928
Target:  5'- gGCCGguucgaaCUCCUCC-CGGCCCCaguGCGc -3'
miRNA:   3'- gCGGCag-----GAGGGGGcGCCGGGGc--UGC- -5'
9131 3' -67.1 NC_002512.2 + 327 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 30077 0.66 0.56303
Target:  5'- -cCCGaUCCgCCCCCGCGGuaaacaucccuguCCCgCGAUGg -3'
miRNA:   3'- gcGGC-AGGaGGGGGCGCC-------------GGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 6619 0.66 0.590117
Target:  5'- gCGgCGUCCcgCCCCCcgacgacGCGGaCgCCCGAgGa -3'
miRNA:   3'- -GCgGCAGGa-GGGGG-------CGCC-G-GGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 34529 0.66 0.572929
Target:  5'- aGCCGaCCagCaCCCGgGGuUCCCGGCGc -3'
miRNA:   3'- gCGGCaGGagG-GGGCgCC-GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 98904 0.66 0.572929
Target:  5'- uCGCCcgaucUCCUCCUCCGaGGUcuCCCGAUa -3'
miRNA:   3'- -GCGGc----AGGAGGGGGCgCCG--GGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 45908 0.66 0.581962
Target:  5'- gGCUGUCCg-CCCCGacaGGCgaCGACGc -3'
miRNA:   3'- gCGGCAGGagGGGGCg--CCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 43652 0.66 0.581962
Target:  5'- gGaCCGggaCCUCgCCCUcggugGCGGCCgCGGCGu -3'
miRNA:   3'- gC-GGCa--GGAG-GGGG-----CGCCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 44998 0.66 0.576538
Target:  5'- cCGCCGcCCgcugaCCCCGUGGCaguagcagcgcacgCUGACGg -3'
miRNA:   3'- -GCGGCaGGag---GGGGCGCCGg-------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 123939 0.66 0.56303
Target:  5'- gGCCGUCagaCUcgugccggcgggaCCCUCGgGGCUCUGGCGu -3'
miRNA:   3'- gCGGCAG---GA-------------GGGGGCgCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 18544 0.66 0.572929
Target:  5'- gGCCGcgcgCgUCCCCCaGCgcccgGGCCCgGACc -3'
miRNA:   3'- gCGGCa---GgAGGGGG-CG-----CCGGGgCUGc -5'
9131 3' -67.1 NC_002512.2 + 42685 0.66 0.572929
Target:  5'- -uCCGaUCC-CCaauCCCGCGGCgCCGGCa -3'
miRNA:   3'- gcGGC-AGGaGG---GGGCGCCGgGGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.