miRNA display CGI


Results 1 - 20 of 415 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 229730 0.66 0.563928
Target:  5'- gCGCgCGcUCCUCcgccggcgCCCCGCccGGCucCCCGGCGu -3'
miRNA:   3'- -GCG-GC-AGGAG--------GGGGCG--CCG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 228564 0.67 0.493634
Target:  5'- aGCCGgacgCUUCCUuaCCGCGGUCgugUCGGCGg -3'
miRNA:   3'- gCGGCa---GGAGGG--GGCGCCGG---GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 227862 0.67 0.51958
Target:  5'- uGCUGUCgCUCCUCC-UGGUgCCGGCu -3'
miRNA:   3'- gCGGCAG-GAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 227059 0.7 0.339162
Target:  5'- cCGCCGUCgUCCgggCCCGCgcccgcgccgGGUCCCGcCGg -3'
miRNA:   3'- -GCGGCAGgAGG---GGGCG----------CCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 226795 0.66 0.554966
Target:  5'- aCGCCGUggucucggCCgCCgCCGUGGCCgCCGcCGc -3'
miRNA:   3'- -GCGGCA--------GGaGGgGGCGCCGG-GGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 226490 0.69 0.419739
Target:  5'- aCGCCGuggUCCUCUggggaCCUGUgGGCCCCG-CGg -3'
miRNA:   3'- -GCGGC---AGGAGG-----GGGCG-CCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 226294 0.69 0.411946
Target:  5'- gCGCCuGUCCccgagaCCCCCGgGGCCugugggCCGugGc -3'
miRNA:   3'- -GCGG-CAGGa-----GGGGGCgCCGG------GGCugC- -5'
9131 3' -67.1 NC_002512.2 + 225665 0.7 0.343942
Target:  5'- uCGaCGUCCcgCuCCCCGCGGCCgcucccaccgaucuCCGGCGu -3'
miRNA:   3'- -GCgGCAGGa-G-GGGGCGCCGG--------------GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 225435 0.66 0.537172
Target:  5'- gGCCGacgCCgaCCCCCGCG--CCCGGCa -3'
miRNA:   3'- gCGGCa--GGa-GGGGGCGCcgGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 225308 0.8 0.079226
Target:  5'- gCGCCG-CCUCCUCCGCcGCCCCaGACGc -3'
miRNA:   3'- -GCGGCaGGAGGGGGCGcCGGGG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 224964 0.66 0.563928
Target:  5'- cCGCCGUCUaCCCgCUggGCGGCggCGGCGg -3'
miRNA:   3'- -GCGGCAGGaGGG-GG--CGCCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 224768 0.68 0.457526
Target:  5'- uCGCUGUCCgugccgacgaugucUCUCCCGCccGCgCCGACGc -3'
miRNA:   3'- -GCGGCAGG--------------AGGGGGCGc-CGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 224679 0.68 0.468297
Target:  5'- cCGCCGUCggCUggCCCGCGGUCCUGcCc -3'
miRNA:   3'- -GCGGCAGgaGG--GGGCGCCGGGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 224616 0.7 0.343256
Target:  5'- uGCCGaCCgggcucggggucgCCgCCGCGGCCUCGGCc -3'
miRNA:   3'- gCGGCaGGa------------GGgGGCGCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 224327 0.66 0.591024
Target:  5'- uCGUCGUCUguUUUUCCGCGGCgCCG-CGc -3'
miRNA:   3'- -GCGGCAGG--AGGGGGCGCCGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 223980 0.79 0.095768
Target:  5'- gGCCGUa-UCCCCCGCGcGCCCCGcCGu -3'
miRNA:   3'- gCGGCAggAGGGGGCGC-CGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 223559 0.67 0.502219
Target:  5'- gCGCCcggUC-CCCCCGCGGgcggcggccaCCUCGACGu -3'
miRNA:   3'- -GCGGca-GGaGGGGGCGCC----------GGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 222600 0.76 0.152422
Target:  5'- gGCCuGUCCggCCCCCGgGGCcucgcgcccgauCCCGACGg -3'
miRNA:   3'- gCGG-CAGGa-GGGGGCgCCG------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 222513 0.7 0.339162
Target:  5'- gCGCCuggCCgCCCgCCGCGGCCgCCGucGCGg -3'
miRNA:   3'- -GCGGca-GGaGGG-GGCGCCGG-GGC--UGC- -5'
9131 3' -67.1 NC_002512.2 + 222436 0.73 0.21334
Target:  5'- gCGCCGcggCUUCCCCCG-GGCCgCGGCc -3'
miRNA:   3'- -GCGGCa--GGAGGGGGCgCCGGgGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.