miRNA display CGI


Results 41 - 60 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 208621 0.68 0.468297
Target:  5'- uGCUGUCgUCCCCCGCucccGCUCCaGCc -3'
miRNA:   3'- gCGGCAGgAGGGGGCGc---CGGGGcUGc -5'
9131 3' -67.1 NC_002512.2 + 207582 0.66 0.572929
Target:  5'- gCGCUccCCUCUCCC-UGGCCUgCGACGg -3'
miRNA:   3'- -GCGGcaGGAGGGGGcGCCGGG-GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 207545 0.69 0.396631
Target:  5'- cCGCUGcgacUCCUCCCUCGCGuCCCUcGCGu -3'
miRNA:   3'- -GCGGC----AGGAGGGGGCGCcGGGGcUGC- -5'
9131 3' -67.1 NC_002512.2 + 206983 0.66 0.563928
Target:  5'- aGCCGcCCgggaUgCCCGUGGCCCgCGGgGu -3'
miRNA:   3'- gCGGCaGGa---GgGGGCGCCGGG-GCUgC- -5'
9131 3' -67.1 NC_002512.2 + 205626 0.74 0.188461
Target:  5'- cCGCCGUCCUUCCugcccgcgggggacgCCGuCGGCgggCCCGACGc -3'
miRNA:   3'- -GCGGCAGGAGGG---------------GGC-GCCG---GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 205175 0.73 0.232796
Target:  5'- aCGCCGcgucucCCUCgCCCGCGuCCUCGACGa -3'
miRNA:   3'- -GCGGCa-----GGAGgGGGCGCcGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 203550 0.7 0.325772
Target:  5'- cCGCCGUCUccgcgUCCCUCGCcaccgacaGGCCCagCGAUGg -3'
miRNA:   3'- -GCGGCAGG-----AGGGGGCG--------CCGGG--GCUGC- -5'
9131 3' -67.1 NC_002512.2 + 202026 0.66 0.581962
Target:  5'- gGCCGgg-UCCCCCGcCGGUCCgGcucGCGg -3'
miRNA:   3'- gCGGCaggAGGGGGC-GCCGGGgC---UGC- -5'
9131 3' -67.1 NC_002512.2 + 201636 0.67 0.493634
Target:  5'- gCGCCGUCgUaCUCgCGgcgcgaCGGCCCCGGCc -3'
miRNA:   3'- -GCGGCAGgA-GGGgGC------GCCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 200142 0.67 0.47667
Target:  5'- uCGCCGggCC-CCCUCGCGcGCCgCC-ACGg -3'
miRNA:   3'- -GCGGCa-GGaGGGGGCGC-CGG-GGcUGC- -5'
9131 3' -67.1 NC_002512.2 + 199602 0.67 0.485116
Target:  5'- aCGCgGgggCCUCCUCCaUGGCgCCGGCu -3'
miRNA:   3'- -GCGgCa--GGAGGGGGcGCCGgGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 198070 0.71 0.312779
Target:  5'- uCGCgCGUCC-CCUcgaCCGC-GCCCCGGCGu -3'
miRNA:   3'- -GCG-GCAGGaGGG---GGCGcCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 197678 0.66 0.572027
Target:  5'- aCGCCcUCCUCaacggacaCCCGCccugccugcccauGGCCCgCGACc -3'
miRNA:   3'- -GCGGcAGGAGg-------GGGCG-------------CCGGG-GCUGc -5'
9131 3' -67.1 NC_002512.2 + 197297 0.67 0.523081
Target:  5'- aGCC-UCUuuaauuUCCgacacgaccccggcaCCCGCGGCgCCCGGCGg -3'
miRNA:   3'- gCGGcAGG------AGG---------------GGGCGCCG-GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 197164 0.7 0.359987
Target:  5'- gGCCGUCUUCCaCCCGCG-CCUCuuCGu -3'
miRNA:   3'- gCGGCAGGAGG-GGGCGCcGGGGcuGC- -5'
9131 3' -67.1 NC_002512.2 + 196198 0.67 0.510869
Target:  5'- gGCCGgg-UCCCUgGCGaGCCuCCGGCGc -3'
miRNA:   3'- gCGGCaggAGGGGgCGC-CGG-GGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 195229 0.67 0.528349
Target:  5'- uGUCGUCg-CCCgCGauGUCCCGACGa -3'
miRNA:   3'- gCGGCAGgaGGGgGCgcCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 194970 0.69 0.392108
Target:  5'- cCGCCGucggucucguccUCCUCUCggcgcaagagggcgaCgGCGGUCCCGGCGg -3'
miRNA:   3'- -GCGGC------------AGGAGGG---------------GgCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 194839 0.74 0.204146
Target:  5'- uGCUGUCCcggCCCgUGCGGaCCCCGAuCGg -3'
miRNA:   3'- gCGGCAGGa--GGGgGCGCC-GGGGCU-GC- -5'
9131 3' -67.1 NC_002512.2 + 194644 0.66 0.581962
Target:  5'- uGcCCGUCCUCUUCUccgaucggGCGGUCCUGcACGc -3'
miRNA:   3'- gC-GGCAGGAGGGGG--------CGCCGGGGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.